C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger protein of the cerebellum 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000067860 Zic3 10090 + X:58022700-58041736 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000088627 Zic3-001 58030643-58036559 protein_coding
  ENSMUST00000088629 Zic3-003 58031010-58041736 protein_coding
  ENSMUST00000088631 Zic3-002 58030999-58036559 protein_coding
  ENSMUST00000137687 Zic3-004 58022700-58031448 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartLiverOvaryPlacentaTestisENSMUST00000088627ENSMUST00000088629ENSMUST00000088631ENSMUST00000137687
Transcript ID Brain Breast Heart Liver Ovary Placenta Testis
ENSMUST00000088627 5.361±3.78 N/A N/A 0.017±0.00 N/A 0.189±0.10 0.300±0.17
ENSMUST00000088629 N/A N/A 0.044±0.01 0.005±0.00 0.056±0.04 N/A 0.365±0.09
ENSMUST00000088631 0.291±0.00 0.029±0.00 N/A 0.011±0.01 0.039±0.03 0.472±0.45 0.057±0.00
ENSMUST00000137687 N/A N/A 0.133±0.00 N/A 0.316±0.10 N/A 1.326±0.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000PM CIL_0000PM_0003 CGP X:57496668-58041736
CIL_0007NT CIL_0007NT_0002 UCNEbase X:57709462-58446094

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001947 IMP heart looping
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007368 IMP determination of left/right symmetry
GO:0007389 IMP pattern specification process
GO:0009952 IGI anterior/posterior pattern specification
GO:0030154 IEA cell differentiation
GO:0030324 IEA lung development
GO:0035469 IEA determination of pancreatic left/right asymmetry
GO:0035545 IMP determination of left/right asymmetry in nervous system
GO:0043565 ISS sequence-specific DNA binding
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0071907 IEA determination of digestive tract left/right asymmetry
GO:0071910 IEA determination of liver left/right asymmetry

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000071497 zic3 zic family member 3 heterotaxy 1 (odd-paired homolog, Drosophila) protein_coding Danio_rerio
ENSG00000156925 ZIC3 Zic family member 3 protein_coding Homo_sapiens

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