C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Zic family member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000287538 ZIC3-003 ENSG00000156925 9606 + X:137566142-137571585 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENST00000287538
Transcript ID Brain Ovary Placenta Testis
ENST00000287538 0.235±0.00 0.010±0.00 0.014±0.00 0.382±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000PM CIL_0000PM_0002 CGP X:137030148-137577691
CIL_0007NT CIL_0007NT_0001 UCNEbase X:137234994-137982903

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001947 IMP heart looping
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007368 IMP determination of left/right symmetry
GO:0007389 IEA pattern specification process
GO:0009952 IEA anterior/posterior pattern specification
GO:0030154 IEA cell differentiation
GO:0030324 IMP lung development
GO:0035469 IMP determination of pancreatic left/right asymmetry
GO:0035545 IEA determination of left/right asymmetry in nervous system
GO:0043565 IDA sequence-specific DNA binding
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0071907 IMP determination of digestive tract left/right asymmetry
GO:0071910 IMP determination of liver left/right asymmetry

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000088627 Zic3-001 protein_coding Mus_musculus 0 3916
ENSMUST00000088631 Zic3-002 protein_coding Mus_musculus 0 2641
ENSMUST00000088629 Zic3-003 protein_coding Mus_musculus 0 1879
ENSMUST00000137687 Zic3-004 protein_coding Mus_musculus 0 520
ENSMUST00000065360 Zic1-002 protein_coding Mus_musculus 0 460
ENSMUST00000034927 Zic1-001 protein_coding Mus_musculus 0 460

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