C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: adaptor-related protein complex 3, sigma 2 subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000157823 AP3S2 9606 - 15:89830599-89894638 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000336418 AP3S2-001 89830599-89894342 protein_coding
  ENST00000423566 AP3S2-013 89834982-89893977 nonsense_mediated_decay
  ENST00000557999 AP3S2-005 89835568-89893994 nonsense_mediated_decay
  ENST00000558011 AP3S2-009 89835440-89893994 protein_coding
  ENST00000558186 AP3S2-011 89837618-89852656 processed_transcript
  ENST00000558806 AP3S2-006 89835594-89894028 nonsense_mediated_decay
  ENST00000558926 AP3S2-012 89835424-89837954 retained_intron
  ENST00000558999 AP3S2-008 89837615-89893994 nonsense_mediated_decay
  ENST00000559162 AP3S2-004 89835600-89888653 retained_intron
  ENST00000559601 AP3S2-003 89888521-89889479 retained_intron
  ENST00000560184 AP3S2-002 89865459-89893970 processed_transcript
  ENST00000560251 AP3S2-010 89865613-89893977 nonsense_mediated_decay
  ENST00000560771 AP3S2-016 89835566-89845774 processed_transcript
  ENST00000560940 AP3S2-014 89835480-89893981 protein_coding
  ENST00000561410 AP3S2-015 89835597-89849007 processed_transcript
  ENST00000617003 AP3S2-017 89893078-89894638 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000336418ENST00000423566ENST00000560940
Transcript ID Adrenal Bladder Brain Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000336418 3.165±0.00 1.085±0.00 2.113±0.00 4.109±2.75 5.451±2.56 2.180±0.11 2.564±0.00 4.706±1.03 2.252±0.93 3.301±0.76 4.717±0.40
ENST00000423566 N/A N/A N/A N/A N/A N/A N/A N/A 4.342±0.00 N/A N/A
ENST00000560940 N/A N/A N/A 7.990±0.00 25.044±0.00 N/A 10.734±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000594 CIL_000594_0001 CGP 15:89784889-89894638
CIL_0007EL CIL_0007EL_0001 CGP 15:89830599-89912882

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005794 IEA Golgi apparatus
GO:0006810 IEA transport
GO:0006886 IEA intracellular protein transport
GO:0008089 ISS anterograde axon cargo transport
GO:0008565 IEA protein transporter activity
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0030117 IEA membrane coat
GO:0030123 IDA AP-3 adaptor complex
GO:0031410 IEA cytoplasmic vesicle
GO:0048490 ISS anterograde synaptic vesicle transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000039882 ap3s2 adaptor-related protein complex 3, sigma 2 subunit protein_coding Danio_rerio
ENSMUSG00000063801 Ap3s2 adaptor-related protein complex 3, sigma 2 subunit protein_coding Mus_musculus

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