C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007EL_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000157823-ENSG00000250021 CGP 9606 15:89830599-89912882
GeneTranscriptPositionBiotype
ENSG00000157823 (AP3S2)
adaptor-related protein complex 3, sigma 2 subunit 		ENST00000336418 (AP3S2-001) 89830599-89894342 protein_coding
ENST00000423566 (AP3S2-013) 89834982-89893977 nonsense_mediated_decay
ENST00000557999 (AP3S2-005) 89835568-89893994 nonsense_mediated_decay
ENST00000558011 (AP3S2-009) 89835440-89893994 protein_coding
ENST00000558186 (AP3S2-011) 89837618-89852656 processed_transcript
ENST00000558806 (AP3S2-006) 89835594-89894028 nonsense_mediated_decay
ENST00000558926 (AP3S2-012) 89835424-89837954 retained_intron
ENST00000558999 (AP3S2-008) 89837615-89893994 nonsense_mediated_decay
ENST00000559162 (AP3S2-004) 89835600-89888653 retained_intron
ENST00000559601 (AP3S2-003) 89888521-89889479 retained_intron
ENST00000560184 (AP3S2-002) 89865459-89893970 processed_transcript
ENST00000560251 (AP3S2-010) 89865613-89893977 nonsense_mediated_decay
ENST00000560771 (AP3S2-016) 89835566-89845774 processed_transcript
ENST00000560940 (AP3S2-014) 89835480-89893981 protein_coding
ENST00000561410 (AP3S2-015) 89835597-89849007 processed_transcript
ENST00000617003 (AP3S2-017) 89893078-89894638 protein_coding
ENSG00000242498 (ARPIN)
actin-related protein 2/3 complex inhibitor 		ENST00000357484 (ARPIN-001) 89895006-89912956 protein_coding
ENST00000460685 (ARPIN-002) 89900875-89912687 protein_coding
ENST00000560096 (ARPIN-003) 89902849-89903943 protein_coding
ENSG00000250021 (C15orf38-AP3S2)
C15orf38-AP3S2 readthrough 		ENST00000398333 (C15orf38-AP3S2-001) 89834308-89912882 protein_coding
ENST00000558648 (C15orf38-AP3S2-007) 89837622-89908399 protein_coding
ENST00000559629 (C15orf38-AP3S2-006) 89837622-89908413 protein_coding
ENST00000560224 (C15orf38-AP3S2-002) 89865461-89903365 processed_transcript
ENSG00000259677 (RP11-493E3.1)
 ENST00000559166 (RP11-493E3.1-001) 89876540-89877285 processed_pseudogene
ENSG00000264796 (MIR5009)
microRNA 5009 		ENST00000578736 (MIR5009-201) 89883931-89884030 miRNA
ENSG00000264966 (MIR5094)
microRNA 5094 		ENST00000578766 (MIR5094-201) 89850637-89850721 miRNA
CIL_0007EL_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000063801-ENSMUSG00000039043 CGP 10090 7:79875332-79935359
GeneTranscriptPositionBiotype
ENSMUSG00000039043 (2610034B18Rik)
RIKEN cDNA 2610034B18 gene 		ENSMUST00000048731 (2610034B18Rik-001) 79925361-79935359 protein_coding
ENSMUSG00000063801 (Ap3s2)
adaptor-related protein complex 3, sigma 2 subunit 		ENSMUST00000075657 (Ap3s2-201) 79875332-79920640 protein_coding
ENSMUSG00000097699 (5430400D12Rik)
RIKEN cDNA 5430400D12 gene 		ENSMUST00000181717 (5430400D12Rik-201) 79920755-79922521 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007EL_0001ENSG00000157823ENST00000336418ENST00000423566ENST00000557999ENST00000558011ENST00000558186ENST00000558806ENST00000558926ENST00000558999ENST00000559162ENST00000559601ENST00000560184ENST00000560251ENST00000560771ENST00000560940ENST00000561410ENST00000617003ENSG00000242498ENST00000357484ENST00000460685ENST00000560096ENSG00000250021ENST00000398333ENST00000558648ENST00000559629ENST00000560224ENSG00000259677ENST00000559166ENSG00000264796ENST00000578736ENSG00000264966ENST00000578766CIL_0007EL_0002ENSMUSG00000039043ENSMUST00000048731ENSMUSG00000063801ENSMUST00000075657ENSMUSG00000097699ENSMUST00000181717
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007EL_0001ENSG00000157823ENST00000336418ENST00000423566ENST00000560940ENSG00000242498ENST00000357484ENSG00000250021ENST00000398333ENSG00000259677ENST00000559166ENSG00000264796ENST00000578736ENSG00000264966ENST00000578766CIL_0007EL_0002ENSMUSG00000039043ENSMUST00000048731ENSMUSG00000063801ENSMUST00000075657ENSMUSG00000097699ENSMUST00000181717
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000157823 ENST00000336418 N/A 3.165±0.00 1.085±0.00 2.113±0.00 N/A N/A 4.109±2.75 5.451±2.56 2.180±0.11 2.564±0.00 4.706±1.03 2.252±0.93 3.301±0.76 4.717±0.40
ENST00000423566 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.342±0.00 N/A N/A
ENST00000557999 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558011 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558186 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558806 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558926 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558999 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559162 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559601 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560184 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560251 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560771 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560940 N/A N/A N/A N/A N/A N/A 7.990±0.00 25.044±0.00 N/A 10.734±0.00 N/A N/A N/A N/A
ENST00000561410 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617003 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000242498 ENST00000357484 7.755±0.00 5.364±0.00 1.152±0.00 2.480±1.66 3.740±2.22 4.190±1.43 1.633±0.94 1.996±1.20 1.729±0.74 2.597±0.00 1.636±0.44 4.089±2.78 3.411±0.40 3.529±1.03
ENST00000460685 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560096 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000250021 ENST00000398333 13.072±0.00 9.201±0.00 4.617±0.00 6.672±3.55 7.297±4.82 7.272±2.90 5.563±4.16 10.297±0.00 5.858±2.12 4.500±2.96 10.028±0.00 8.554±4.61 10.172±4.14 10.710±2.50
ENST00000558648 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559629 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560224 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000259677 ENST00000559166 0.028±0.00 N/A N/A 0.043±0.00 0.083±0.01 0.013±0.00 0.070±0.00 0.057±0.00 N/A 0.572±0.00 N/A 0.053±0.03 N/A 0.015±0.00
ENSG00000264796 ENST00000578736 N/A 0.352±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000264966 ENST00000578766 1.722±0.00 N/A N/A 0.284±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000039043 ENSMUST00000048731 6.364±2.76 9.299±1.21 7.862±0.92 4.048±0.79 7.439±1.24 13.527±3.14 4.252±0.36 6.582±1.14 2.012±0.37 7.877±1.66 1.284±0.31 9.641±1.60 11.135±3.31 0.197±0.07
ENSMUSG00000063801 ENSMUST00000075657 7.670±0.94 13.342±4.18 6.990±0.98 13.171±6.40 8.235±1.74 6.436±3.36 5.828±0.44 9.322±1.05 6.076±0.58 7.362±2.67 7.101±0.29 10.636±4.43 3.436±1.54 2.432±1.13
ENSMUSG00000097699 ENSMUST00000181717 0.122±0.10 0.190±0.08 0.029±0.00 0.334±0.12 0.141±0.03 0.104±0.06 0.092±0.04 0.123±0.06 0.067±0.02 0.148±0.05 0.122±0.03 0.180±0.07 0.041±0.03 0.046±0.01

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