C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: mitochondrial ribosomal protein L17
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000158042 MRPL17 9606 - 11:6680782-6683401 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000288937 MRPL17-001 6680782-6683401 protein_coding
  ENST00000529958 MRPL17-002 6681951-6683296 retained_intron
  ENST00000532203 MRPL17-004 6682149-6683316 protein_coding
  ENST00000532676 MRPL17-003 6681151-6682400 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000288937ENST00000529958ENST00000532203ENST00000532676
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000288937 1.312±0.00 1.474±0.00 4.561±0.00 3.920±2.14 2.632±0.87 2.931±0.82 3.314±1.31 2.342±0.43 2.642±1.47 2.878±0.36 3.101±1.17 4.841±0.73 7.467±0.61 3.108±0.20
ENST00000529958 8.621±0.00 16.294±0.00 N/A 5.869±1.59 9.399±0.00 7.623±3.53 6.301±4.41 8.931±5.53 6.376±4.79 18.546±15.62 5.183±0.00 13.718±6.22 27.025±14.06 10.064±4.98
ENST00000532203 5.566±0.00 10.706±0.00 N/A 9.547±0.00 10.394±0.00 14.517±0.00 12.338±0.00 13.644±0.00 11.620±0.00 26.763±0.00 4.770±0.00 22.264±0.00 23.653±0.00 13.368±1.39
ENST00000532676 N/A 13.163±0.00 N/A N/A N/A N/A N/A 14.106±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VT CIL_0003VT_0001 CGP 11:6621323-6683401

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005739 IEA mitochondrion
GO:0005743 IEA mitochondrial inner membrane
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0019904 IPI protein domain specific binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075677 mrpl17 mitochondrial ribosomal protein L17 protein_coding Danio_rerio
ENSMUSG00000030879 Mrpl17 mitochondrial ribosomal protein L17 protein_coding Mus_musculus

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