C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: mitochondrial ribosomal protein L17
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030879 Mrpl17 10090 - 7:105806658-105811099 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000033170 Mrpl17-002 105809680-105810996 retained_intron
  ENSMUST00000124482 Mrpl17-001 105806658-105811099 protein_coding
  ENSMUST00000176158 Mrpl17-003 105809657-105810958 nonsense_mediated_decay
  ENSMUST00000176498 Mrpl17-005 105809765-105810999 processed_transcript
  ENSMUST00000176887 Mrpl17-004 105810121-105811028 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033170ENSMUST00000124482ENSMUST00000176158ENSMUST00000176498ENSMUST00000176887
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033170 10.781±1.46 14.583±0.57 N/A N/A 11.824±0.00 10.931±3.30 N/A 10.306±0.00 9.807±1.43 7.989±1.79 N/A 13.143±1.56 N/A N/A
ENSMUST00000124482 6.589±0.73 14.088±4.12 2.375±0.14 2.444±1.44 7.160±2.74 10.013±2.25 3.448±0.36 5.411±1.31 5.178±2.30 5.940±0.49 1.910±0.39 8.748±4.27 2.695±2.36 1.713±0.20
ENSMUST00000176158 19.386±6.62 N/A 10.217±2.73 5.015±0.49 14.890±0.89 N/A 8.162±1.37 16.467±2.80 15.865±2.03 N/A 6.572±0.88 12.797±0.22 12.663±8.76 3.628±0.51
ENSMUST00000176498 47.454±18.01 N/A 38.204±0.00 25.686±2.26 42.806±7.34 25.335±2.51 25.658±3.08 43.063±5.92 35.746±13.70 17.179±2.36 31.062±5.14 46.452±15.22 66.695±37.45 14.923±1.46
ENSMUST00000176887 88.859±4.75 121.536±20.90 33.386±0.00 26.633±8.87 69.553±14.37 69.403±10.24 29.825±3.29 68.702±4.68 59.172±9.49 51.109±6.06 N/A 130.419±30.38 62.709±22.36 22.667±3.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VT CIL_0003VT_0002 CGP 7:105752989-105811099

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000002 TAS mitochondrial genome maintenance
GO:0003735 ISA structural constituent of ribosome
GO:0005739 IDA mitochondrion
GO:0005743 IDA mitochondrial inner membrane
GO:0005762 ISA mitochondrial large ribosomal subunit
GO:0006412 ISA translation
GO:0019904 IEA protein domain specific binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075677 mrpl17 mitochondrial ribosomal protein L17 protein_coding Danio_rerio
ENSG00000158042 MRPL17 mitochondrial ribosomal protein L17 protein_coding Homo_sapiens

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