C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mitochondrial ribosomal protein L17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000288937 MRPL17-001 ENSG00000158042 9606 - 11:6680782-6683401 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000288937
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000288937 1.312±0.00 1.474±0.00 4.561±0.00 3.920±2.14 2.632±0.87 2.931±0.82 3.314±1.31 2.342±0.43 2.642±1.47 2.878±0.36 3.101±1.17 4.841±0.73 7.467±0.61 3.108±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VT CIL_0003VT_0001 CGP 11:6621323-6683401

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005739 IEA mitochondrion
GO:0005743 IEA mitochondrial inner membrane
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0019904 IPI protein domain specific binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000124482 Mrpl17-001 protein_coding Mus_musculus 0 551
ENSMUST00000176498 Mrpl17-005 processed_transcript Mus_musculus 0 372
ENSMUST00000176887 Mrpl17-004 protein_coding Mus_musculus 0 283
ENSMUST00000033170 Mrpl17-002 retained_intron Mus_musculus 0 281
ENSMUST00000176158 Mrpl17-003 nonsense_mediated_decay Mus_musculus 0 268

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