C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger CCCH-type containing 18
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000158545 ZC3H18 9606 + 16:88570381-88631966 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000301011 ZC3H18-001 88570381-88631966 protein_coding
  ENST00000452588 ZC3H18-002 88570403-88631398 protein_coding
  ENST00000563382 ZC3H18-010 88624688-88625684 retained_intron
  ENST00000564161 ZC3H18-004 88608517-88626699 retained_intron
  ENST00000564341 ZC3H18-014 88624043-88631847 protein_coding
  ENST00000565583 ZC3H18-013 88627922-88631930 protein_coding
  ENST00000566317 ZC3H18-011 88628648-88631424 retained_intron
  ENST00000566496 ZC3H18-005 88627062-88631934 retained_intron
  ENST00000566660 ZC3H18-012 88630155-88631256 retained_intron
  ENST00000567085 ZC3H18-009 88586617-88623270 protein_coding
  ENST00000568072 ZC3H18-008 88599836-88609264 retained_intron
  ENST00000569435 ZC3H18-007 88570478-88599802 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000301011ENST00000452588ENST00000564161ENST00000565583ENST00000566496ENST00000567085ENST00000569435
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000301011 7.328±0.00 6.002±0.00 0.307±0.00 3.111±2.72 2.708±2.45 8.918±0.00 2.908±2.57 4.331±3.16 3.607±1.24 4.094±3.62 9.211±0.00 9.037±7.38 12.236±3.07 14.302±0.00
ENST00000452588 5.076±0.00 4.081±0.00 N/A 4.619±0.00 5.281±0.00 2.510±0.00 N/A 2.881±0.00 N/A 4.013±0.00 2.850±0.00 3.962±2.41 5.416±2.73 10.939±1.08
ENST00000564161 N/A N/A N/A N/A 0.286±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565583 N/A N/A N/A 1.165±0.00 N/A N/A N/A 1.622±0.00 N/A N/A N/A 9.629±1.39 12.050±0.00 23.447±0.00
ENST00000566496 N/A N/A N/A N/A 0.415±0.00 0.544±0.00 N/A N/A N/A N/A 0.777±0.00 5.076±0.00 5.931±0.00 11.718±0.00
ENST00000567085 N/A N/A N/A N/A 1.080±0.00 N/A 0.486±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000569435 N/A N/A N/A N/A 1.081±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006XT CIL_0006XT_0001 CGP 16:88570381-88640473

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062506 zc3h18 zinc finger CCCH-type containing 18 protein_coding Danio_rerio
ENSMUSG00000017478 Zc3h18 zinc finger CCCH-type containing 18 protein_coding Mus_musculus

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