C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger CCCH-type containing 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000452588 ZC3H18-002 ENSG00000158545 9606 + 16:88570403-88631398 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLungMuscleOvaryPlacentaTestisENST00000452588
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Lung Muscle Ovary Placenta Testis
ENST00000452588 5.076±0.00 4.081±0.00 4.619±0.00 5.281±0.00 2.510±0.00 2.881±0.00 4.013±0.00 2.850±0.00 3.962±2.41 5.416±2.73 10.939±1.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006XT CIL_0006XT_0001 CGP 16:88570381-88640473

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000017622 Zc3h18-001 protein_coding Mus_musculus 0 3282
ENSMUST00000119613 Gm5939-001 processed_pseudogene Mus_musculus 0 2577
ENSMUST00000093073 Zc3h18-002 protein_coding Mus_musculus 0 2412
ENSMUST00000176629 Zc3h18-005 protein_coding Mus_musculus 0 2348
ENSMUST00000177123 Zc3h18-004 retained_intron Mus_musculus 0 1142
ENSMUST00000177386 Zc3h18-003 retained_intron Mus_musculus 0 867
ENSMUST00000175819 Zc3h18-008 protein_coding Mus_musculus 0 422
ENSMUST00000176699 Zc3h18-007 protein_coding Mus_musculus 0 233
ENSMUST00000175798 Zc3h18-010 retained_intron Mus_musculus 7.00649e-44 183
ENSDART00000064500 sox9b-001 protein_coding Danio_rerio 0.0002 53
ENSDART00000124464 sox9b-201 protein_coding Danio_rerio 0.00008 53

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