C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger CCCH-type containing 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000301011 ZC3H18-001 ENSG00000158545 9606 + 16:88570381-88631966 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000301011
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000301011 7.328±0.00 6.002±0.00 0.307±0.00 3.111±2.72 2.708±2.45 8.918±0.00 2.908±2.57 4.331±3.16 3.607±1.24 4.094±3.62 9.211±0.00 9.037±7.38 12.236±3.07 14.302±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006XT CIL_0006XT_0001 CGP 16:88570381-88640473

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000093073 Zc3h18-002 protein_coding Mus_musculus 0 3256
ENSMUST00000017622 Zc3h18-001 protein_coding Mus_musculus 0 2508
ENSMUST00000119613 Gm5939-001 processed_pseudogene Mus_musculus 0 1890
ENSMUST00000176629 Zc3h18-005 protein_coding Mus_musculus 0 1552
ENSMUST00000177123 Zc3h18-004 retained_intron Mus_musculus 0 1238
ENSMUST00000177386 Zc3h18-003 retained_intron Mus_musculus 0 749
ENSMUST00000175819 Zc3h18-008 protein_coding Mus_musculus 0 422
ENSMUST00000176699 Zc3h18-007 protein_coding Mus_musculus 0 233
ENSMUST00000175798 Zc3h18-010 retained_intron Mus_musculus 7.9874e-44 183
ENSDART00000064500 sox9b-001 protein_coding Danio_rerio 0.0002 53
ENSDART00000124464 sox9b-201 protein_coding Danio_rerio 0.00008 53

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