C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ELK4, ETS-domain protein (SRF accessory protein 1)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000158711 ELK4 9606 - 1:205597556-205631962 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000289703 ELK4-002 205619268-205631962 protein_coding
  ENST00000357992 ELK4-001 205607943-205631962 protein_coding
  ENST00000468523 ELK4-003 205620614-205625667 protein_coding
  ENST00000616704 ELK4-004 205597556-205631893 nonsense_mediated_decay
  ENST00000617725 ELK4-005 205597790-205600194 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000357992
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000357992 9.552±0.00 6.436±0.00 2.082±0.00 5.158±0.00 4.352±0.00 3.181±0.73 2.830±1.86 4.061±1.62 5.702±0.00 3.077±0.85 2.277±1.55 1.271±0.00 4.532±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000TQ CIL_0000TQ_0002 CGP 1:205504595-205602918
CIL_00015S CIL_00015S_0002 CGP 1:205568885-205631962

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001047 TAS core promoter binding
GO:0003677 TAS DNA binding
GO:0003682 IDA chromatin binding
GO:0003700 NAS:IEA sequence-specific DNA binding transcription factor activity
GO:0003712 TAS transcription cofactor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0030154 IBA cell differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0070932 IDA histone H3 deacetylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077092 elk4 ELK4, ETS-domain protein protein_coding Danio_rerio
ENSMUSG00000026436 Elk4 ELK4, member of ETS oncogene family protein_coding Mus_musculus

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