C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ELK4, ETS-domain protein (SRF accessory protein 1)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000357992 ELK4-001 ENSG00000158711 9606 - 1:205607943-205631962 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000357992
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000357992 9.552±0.00 6.436±0.00 2.082±0.00 5.158±0.00 4.352±0.00 3.181±0.73 2.830±1.86 4.061±1.62 5.702±0.00 3.077±0.85 2.277±1.55 1.271±0.00 4.532±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000TQ CIL_0000TQ_0002 CGP 1:205504595-205602918
CIL_00015S CIL_00015S_0002 CGP 1:205568885-205631962

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001047 TAS core promoter binding
GO:0003677 TAS DNA binding
GO:0003682 IDA chromatin binding
GO:0003700 NAS:IEA sequence-specific DNA binding transcription factor activity
GO:0003712 TAS transcription cofactor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0030154 IBA cell differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0070932 IDA histone H3 deacetylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000086556 Elk4-001 protein_coding Mus_musculus 0 1448
ENSMUST00000027696 Elk4-003 protein_coding Mus_musculus 0 1343
ENSMUST00000146432 Elk4-004 protein_coding Mus_musculus 0 917
ENSMUST00000147218 Elk4-002 nonsense_mediated_decay Mus_musculus 0 852
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.000000002 71

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