C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: single-minded family bHLH transcription factor 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000159263 SIM2 9606 + 21:36699133-36749917 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000290399 SIM2-001 36699134-36749917 protein_coding
  ENST00000431229 SIM2-004 36709181-36745871 protein_coding
  ENST00000460783 SIM2-003 36699133-36710613 processed_transcript
  ENST00000481185 SIM2-002 36699134-36746324 retained_intron
  ENST00000483178 SIM2-005 36712566-36720587 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000290399ENST00000431229ENST00000460783ENST00000481185
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000290399 0.106±0.00 0.416±0.00 1.628±0.00 0.684±0.27 0.292±0.25 0.223±0.09 0.094±0.07 1.728±1.71 0.193±0.10 N/A 0.972±0.79 3.000±2.01 0.117±0.03 0.449±0.24
ENST00000431229 N/A N/A N/A N/A N/A N/A 0.036±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000460783 0.093±0.00 0.356±0.00 2.706±0.00 N/A N/A N/A 0.136±0.00 0.021±0.00 N/A 0.129±0.06 N/A 1.523±0.00 N/A N/A
ENST00000481185 0.039±0.00 N/A N/A N/A N/A N/A 0.020±0.00 N/A N/A 0.088±0.00 0.097±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006Z7 CIL_0006Z7_0001 CGP 21:36460621-36749917
CIL_0006Z8 CIL_0006Z8_0001 CGP 21:36699133-36990236

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0004871 IEA signal transducer activity
GO:0005515 IEA protein binding
GO:0005634 IDA:IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007165 IEA signal transduction
GO:0007399 IEA nervous system development
GO:0009880 IEA embryonic pattern specification
GO:0030154 IEA cell differentiation
GO:0030324 IEA lung development
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0046982 IEA protein heterodimerization activity
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000088115 CABZ01064670.1 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000062713 Sim2 single-minded homolog 2 (Drosophila) protein_coding Mus_musculus

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