C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006Z8_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000159263-ENSG00000159267 CGP 9606 21:36699133-36990236
GeneTranscriptPositionBiotype
ENSG00000159263 (SIM2)
single-minded family bHLH transcription factor 2 		ENST00000290399 (SIM2-001) 36699134-36749917 protein_coding
ENST00000431229 (SIM2-004) 36709181-36745871 protein_coding
ENST00000460783 (SIM2-003) 36699133-36710613 processed_transcript
ENST00000481185 (SIM2-002) 36699134-36746324 retained_intron
ENST00000483178 (SIM2-005) 36712566-36720587 protein_coding
ENSG00000159267 (HLCS)
holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) 		ENST00000336648 (HLCS-001) 36750888-36990236 protein_coding
ENST00000399120 (HLCS-002) 36751192-36966473 protein_coding
ENST00000419461 (HLCS-005) 36937185-36966639 protein_coding
ENST00000427746 (HLCS-004) 36937214-36990224 protein_coding
ENST00000448340 (HLCS-003) 36937168-36980628 protein_coding
ENST00000482273 (HLCS-006) 36896570-36930417 processed_transcript
ENST00000612277 (HLCS-201) 36750888-36980964 protein_coding
ENSG00000199806 (RNA5SP491)
RNA, 5S ribosomal pseudogene 491 		ENST00000362936 (RNA5SP491-201) 36851911-36852028 rRNA
ENSG00000224269 (AP000697.6)
 ENST00000430607 (AP000697.6-001) 36698773-36701564 antisense
ENSG00000237646 (HLCS-IT1)
HLCS intronic transcript 1 (non-protein coding) 		ENST00000434195 (HLCS-IT1-001) 36803984-36806284 sense_intronic

Homo sapiens Ensembl (GRCh38)

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CIL_0006Z8_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000062713-ENSMUSG00000040820 CGP 10090 16:94085260-94313563
GeneTranscriptPositionBiotype
ENSMUSG00000040820 (Hlcs)
holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase) 		ENSMUST00000099512 (Hlcs-201) 94129306-94287856 protein_coding
ENSMUST00000163193 (Hlcs-202) 94129195-94313563 protein_coding
ENSMUSG00000062713 (Sim2)
single-minded homolog 2 (Drosophila) 		ENSMUST00000072182 (Sim2-201) 94085260-94127032 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006Z8_0001ENSG00000159263ENST00000290399ENST00000431229ENST00000460783ENST00000481185ENST00000483178ENSG00000159267ENST00000336648ENST00000399120ENST00000419461ENST00000427746ENST00000448340ENST00000482273ENST00000612277ENSG00000199806ENST00000362936ENSG00000224269ENST00000430607ENSG00000237646ENST00000434195CIL_0006Z8_0002ENSMUSG00000040820ENSMUST00000099512ENSMUST00000163193ENSMUSG00000062713ENSMUST00000072182
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006Z8_0001ENSG00000159263ENST00000290399ENST00000431229ENST00000460783ENST00000481185ENSG00000159267ENST00000336648ENST00000399120ENST00000612277ENSG00000199806ENST00000362936ENSG00000224269ENST00000430607ENSG00000237646ENST00000434195CIL_0006Z8_0002ENSMUSG00000040820ENSMUST00000099512ENSMUST00000163193ENSMUSG00000062713ENSMUST00000072182
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000159263 ENST00000290399 0.106±0.00 0.416±0.00 1.628±0.00 0.684±0.27 0.292±0.25 0.223±0.09 0.094±0.07 1.728±1.71 0.193±0.10 N/A 0.972±0.79 3.000±2.01 0.117±0.03 0.449±0.24
ENST00000431229 N/A N/A N/A N/A N/A N/A 0.036±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000460783 0.093±0.00 0.356±0.00 2.706±0.00 N/A N/A N/A 0.136±0.00 0.021±0.00 N/A 0.129±0.06 N/A 1.523±0.00 N/A N/A
ENST00000481185 0.039±0.00 N/A N/A N/A N/A N/A 0.020±0.00 N/A N/A 0.088±0.00 0.097±0.00 N/A N/A N/A
ENST00000483178 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000159267 ENST00000336648 N/A N/A N/A 0.548±0.02 0.302±0.00 0.323±0.00 0.597±0.00 2.620±0.00 N/A 0.385±0.00 0.389±0.00 2.583±0.96 0.362±0.00 1.638±0.17
ENST00000399120 0.482±0.00 1.566±0.00 N/A 0.374±0.00 1.181±0.15 0.194±0.00 0.386±0.04 N/A 0.690±0.12 0.424±0.02 N/A 0.687±0.00 N/A N/A
ENST00000419461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427746 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000448340 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482273 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000612277 0.283±0.00 N/A N/A 0.313±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000199806 ENST00000362936 N/A N/A N/A N/A N/A 0.341±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000224269 ENST00000430607 N/A N/A N/A N/A N/A N/A N/A 0.858±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000237646 ENST00000434195 0.119±0.00 0.061±0.00 N/A 0.067±0.00 0.219±0.09 N/A N/A 0.506±0.00 0.027±0.00 1.588±0.00 1.531±0.00 0.188±0.10 0.070±0.00 0.352±0.29
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000040820 ENSMUST00000099512 2.286±0.13 N/A N/A 1.158±0.85 1.570±0.00 2.653±0.00 0.477±0.00 0.966±0.01 0.569±0.28 1.129±0.00 0.861±0.32 2.371±0.25 1.152±0.19 0.546±0.37
ENSMUST00000163193 1.949±1.76 N/A 1.414±0.07 0.432±0.30 1.424±0.82 N/A 0.780±0.31 0.583±0.17 0.511±0.26 0.959±0.35 0.851±0.35 1.812±1.19 1.229±0.62 0.480±0.26
ENSMUSG00000062713 ENSMUST00000072182 0.012±0.01 N/A 0.003±0.00 0.089±0.08 0.147±0.04 0.014±0.00 0.057±0.01 3.395±1.18 0.011±0.01 1.853±1.84 5.572±0.58 0.031±0.02 0.077±0.06 0.035±0.02

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