C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: single-minded family bHLH transcription factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000290399 SIM2-001 ENSG00000159263 9606 + 21:36699134-36749917 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000290399
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000290399 0.106±0.00 0.416±0.00 1.628±0.00 0.684±0.27 0.292±0.25 0.223±0.09 0.094±0.07 1.728±1.71 0.193±0.10 0.972±0.79 3.000±2.01 0.117±0.03 0.449±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006Z7 CIL_0006Z7_0001 CGP 21:36460621-36749917
CIL_0006Z8 CIL_0006Z8_0001 CGP 21:36699133-36990236

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0004871 IEA signal transducer activity
GO:0005515 IEA protein binding
GO:0005634 IDA:IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007165 IEA signal transduction
GO:0007399 IEA nervous system development
GO:0009880 IEA embryonic pattern specification
GO:0030154 IEA cell differentiation
GO:0030324 IEA lung development
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0046982 IEA protein heterodimerization activity
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000072182 Sim2-201 protein_coding Mus_musculus 0 2388
ENSDART00000129364 CABZ01064670.1-201 protein_coding Danio_rerio 0 259

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