C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zyxin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000159840 ZYX 9606 + 7:143381080-143391111 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000322764 ZYX-001 143381080-143391111 protein_coding
  ENST00000354434 ZYX-006 143381575-143391109 protein_coding
  ENST00000392910 ZYX-007 143381907-143391109 protein_coding
  ENST00000436448 ZYX-009 143382850-143388500 nonsense_mediated_decay
  ENST00000446634 ZYX-003 143383000-143388896 protein_coding
  ENST00000449630 ZYX-005 143381295-143382925 protein_coding
  ENST00000457235 ZYX-010 143381361-143382676 protein_coding
  ENST00000468083 ZYX-002 143381360-143383235 retained_intron
  ENST00000477373 ZYX-008 143382028-143383240 processed_transcript
  ENST00000497119 ZYX-004 143387889-143388597 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000322764ENST00000354434ENST00000392910ENST00000449630ENST00000468083
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000322764 48.751±0.00 36.106±0.00 0.705±0.00 4.099±3.49 21.033±18.79 42.622±0.00 11.947±0.00 25.087±0.00 4.175±3.29 39.012±37.03 9.124±0.00 90.702±94.35 58.977±35.69 28.769±0.00
ENST00000354434 129.611±0.00 99.227±0.00 N/A 28.853±0.00 90.680±0.00 124.167±0.00 21.941±0.00 29.814±0.00 10.655±0.00 89.652±88.54 15.290±14.20 98.582±35.69 69.501±4.09 81.924±15.87
ENST00000392910 N/A 31.792±0.00 N/A 9.784±8.89 N/A N/A 0.232±0.00 2.624±0.00 1.411±0.00 N/A N/A 48.558±0.00 38.051±0.00 19.741±0.00
ENST00000449630 N/A N/A N/A N/A N/A N/A N/A N/A 3.701±0.00 N/A N/A N/A N/A N/A
ENST00000468083 N/A N/A N/A N/A N/A N/A 0.495±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00074Q CIL_00074Q_0001 CGP 7:143353400-143391111
CIL_00074P CIL_00074P_0001 CGP 7:143381080-143408892

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001725 IDA stress fiber
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0005913 IDA cell-cell adherens junction
GO:0005925 IDA focal adhesion
GO:0007155 TAS cell adhesion
GO:0007160 IC cell-matrix adhesion
GO:0007165 TAS signal transduction
GO:0007179 IMP transforming growth factor beta receptor signaling pathway
GO:0007229 IMP integrin-mediated signaling pathway
GO:0007267 TAS cell-cell signaling
GO:0008270 IEA zinc ion binding
GO:0016032 IEA viral process
GO:0043149 IMP stress fiber assembly
GO:0044822 IDA poly(A) RNA binding
GO:0050727 IEA regulation of inflammatory response

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075733 zyx zyxin protein_coding Danio_rerio
ENSMUSG00000029860 Zyx zyxin protein_coding Mus_musculus

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