C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00074P_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000159840-ENSG00000146904 CGP 9606 7:143381080-143408892
GeneTranscriptPositionBiotype
ENSG00000146904 (EPHA1)
EPH receptor A1 		ENST00000275815 (EPHA1-001) 143391112-143408892 protein_coding
ENST00000458129 (EPHA1-008) 143390289-143391391 processed_transcript
ENST00000465208 (EPHA1-006) 143394210-143395601 retained_intron
ENST00000479459 (EPHA1-004) 143397481-143398712 retained_intron
ENST00000488068 (EPHA1-002) 143391411-143408805 retained_intron
ENST00000494989 (EPHA1-005) 143394807-143396681 retained_intron
ENST00000497891 (EPHA1-003) 143400826-143407650 retained_intron
ENSG00000159840 (ZYX)
zyxin 		ENST00000322764 (ZYX-001) 143381080-143391111 protein_coding
ENST00000354434 (ZYX-006) 143381575-143391109 protein_coding
ENST00000392910 (ZYX-007) 143381907-143391109 protein_coding
ENST00000436448 (ZYX-009) 143382850-143388500 nonsense_mediated_decay
ENST00000446634 (ZYX-003) 143383000-143388896 protein_coding
ENST00000449630 (ZYX-005) 143381295-143382925 protein_coding
ENST00000457235 (ZYX-010) 143381361-143382676 protein_coding
ENST00000468083 (ZYX-002) 143381360-143383235 retained_intron
ENST00000477373 (ZYX-008) 143382028-143383240 processed_transcript
ENST00000497119 (ZYX-004) 143387889-143388597 retained_intron
ENSG00000229153 (EPHA1-AS1)
EPHA1 antisense RNA 1 		ENST00000421648 (EPHA1-AS1-002) 143407833-143415830 antisense
ENST00000429289 (EPHA1-AS1-001) 143407813-143523449 antisense
ENSG00000278449 (MIR6892)
microRNA 6892 		ENST00000612346 (MIR6892-201) 143382686-143382800 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_00074P_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029860-ENSMUSG00000029859 CGP 10090 6:42349828-42373268
GeneTranscriptPositionBiotype
ENSMUSG00000029859 (Epha1)
Eph receptor A1 		ENSMUST00000073387 (Epha1-201) 42358487-42373268 protein_coding
ENSMUSG00000029860 (Zyx)
zyxin 		ENSMUST00000070635 (Zyx-201) 42349828-42358392 protein_coding
ENSMUST00000164375 (Zyx-202) 42350058-42360146 protein_coding
ENSMUSG00000101268 (RP23-329D23.4)
RIKEN cDNA 2010310C07 gene 		ENSMUST00000187172 (RP23-329D23.4-002) 42377956-42381215 antisense
ENSMUST00000190889 (RP23-329D23.4-001) 42370671-42380555 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00074P_0001ENSG00000146904ENST00000275815ENST00000458129ENST00000465208ENST00000479459ENST00000488068ENST00000494989ENST00000497891ENSG00000159840ENST00000322764ENST00000354434ENST00000392910ENST00000436448ENST00000446634ENST00000449630ENST00000457235ENST00000468083ENST00000477373ENST00000497119ENSG00000229153ENST00000421648ENST00000429289ENSG00000278449ENST00000612346CIL_00074P_0002ENSMUSG00000029859ENSMUST00000073387ENSMUSG00000029860ENSMUST00000070635ENSMUST00000164375ENSMUSG00000101268ENSMUST00000187172ENSMUST00000190889
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00074P_0001ENSG00000146904ENST00000275815ENST00000488068ENST00000497891ENSG00000159840ENST00000322764ENST00000354434ENST00000392910ENST00000449630ENST00000468083ENSG00000229153ENST00000421648ENST00000429289ENSG00000278449ENST00000612346CIL_00074P_0002ENSMUSG00000029859ENSMUST00000073387ENSMUSG00000029860ENSMUST00000070635ENSMUST00000164375ENSMUSG00000101268ENSMUST00000187172ENSMUST00000190889
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000146904 ENST00000275815 N/A N/A N/A N/A 0.792±0.00 1.459±0.00 N/A 2.867±0.00 3.269±0.00 0.770±0.00 N/A 1.380±0.00 N/A N/A
ENST00000458129 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465208 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479459 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488068 N/A N/A 0.484±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494989 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497891 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.549±0.00 N/A N/A N/A
ENSG00000159840 ENST00000322764 48.751±0.00 36.106±0.00 0.705±0.00 4.099±3.49 21.033±18.79 42.622±0.00 11.947±0.00 25.087±0.00 4.175±3.29 39.012±37.03 9.124±0.00 90.702±94.35 58.977±35.69 28.769±0.00
ENST00000354434 129.611±0.00 99.227±0.00 N/A 28.853±0.00 90.680±0.00 124.167±0.00 21.941±0.00 29.814±0.00 10.655±0.00 89.652±88.54 15.290±14.20 98.582±35.69 69.501±4.09 81.924±15.87
ENST00000392910 N/A 31.792±0.00 N/A 9.784±8.89 N/A N/A 0.232±0.00 2.624±0.00 1.411±0.00 N/A N/A 48.558±0.00 38.051±0.00 19.741±0.00
ENST00000436448 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000446634 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449630 N/A N/A N/A N/A N/A N/A N/A N/A 3.701±0.00 N/A N/A N/A N/A N/A
ENST00000457235 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468083 N/A N/A N/A N/A N/A N/A 0.495±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000477373 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497119 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000229153 ENST00000421648 N/A 0.677±0.00 N/A N/A N/A N/A N/A 0.154±0.00 N/A 1.147±0.00 N/A 0.365±0.16 0.371±0.03 0.454±0.01
ENST00000429289 0.073±0.00 N/A 0.025±0.00 0.056±0.04 0.287±0.24 0.124±0.08 0.045±0.00 0.055±0.03 0.094±0.08 0.251±0.19 0.058±0.00 0.033±0.01 0.096±0.05 0.049±0.02
ENSG00000278449 ENST00000612346 N/A 0.659±0.00 N/A 0.478±0.00 0.688±0.00 N/A N/A N/A N/A N/A N/A 7.841±7.41 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029859 ENSMUST00000073387 N/A N/A 14.794±0.95 N/A N/A 14.296±1.04 N/A 8.924±1.03 10.902±4.70 17.035±0.83 N/A 3.572±0.00 8.500±2.50 N/A
ENSMUSG00000029860 ENSMUST00000070635 77.087±30.84 42.683±9.41 55.250±2.01 20.281±5.86 51.802±18.82 42.558±8.93 26.174±9.30 20.677±8.27 17.224±4.73 111.415±17.28 7.728±1.06 58.037±26.12 97.249±47.74 12.642±4.96
ENSMUST00000164375 N/A N/A 6.834±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000101268 ENSMUST00000187172 0.032±0.01 N/A 0.077±0.03 0.019±0.01 N/A 0.127±0.00 0.046±0.03 N/A 0.032±0.03 0.153±0.04 N/A 0.018±0.00 0.022±0.01 0.021±0.00
ENSMUST00000190889 N/A N/A N/A N/A 0.141±0.00 0.152±0.00 0.025±0.00 N/A 0.017±0.00 0.081±0.02 N/A 0.028±0.00 N/A N/A

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