C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zyxin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000322764 ZYX-001 ENSG00000159840 9606 + 7:143381080-143391111 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000322764
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000322764 48.751±0.00 36.106±0.00 0.705±0.00 4.099±3.49 21.033±18.79 42.622±0.00 11.947±0.00 25.087±0.00 4.175±3.29 39.012±37.03 9.124±0.00 90.702±94.35 58.977±35.69 28.769±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00074Q CIL_00074Q_0001 CGP 7:143353400-143391111
CIL_00074P CIL_00074P_0001 CGP 7:143381080-143408892

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001725 IDA stress fiber
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0005913 IDA cell-cell adherens junction
GO:0005925 IDA focal adhesion
GO:0007155 TAS cell adhesion
GO:0007160 IC cell-matrix adhesion
GO:0007165 TAS signal transduction
GO:0007179 IMP transforming growth factor beta receptor signaling pathway
GO:0007229 IMP integrin-mediated signaling pathway
GO:0007267 TAS cell-cell signaling
GO:0008270 IEA zinc ion binding
GO:0016032 IEA viral process
GO:0043149 IMP stress fiber assembly
GO:0044822 IDA poly(A) RNA binding
GO:0050727 IEA regulation of inflammatory response

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000070635 Zyx-201 protein_coding Mus_musculus 0 1982
ENSMUST00000164375 Zyx-202 protein_coding Mus_musculus 0 1738

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