C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polyamine-modulated factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000160783 PMF1 9606 + 1:156212993-156240042 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000368273 PMF1-005 156213006-156239851 protein_coding
  ENST00000368277 PMF1-001 156213007-156240042 protein_coding
  ENST00000368279 PMF1-002 156212993-156240040 protein_coding
  ENST00000466489 PMF1-008 156213005-156233652 nonsense_mediated_decay
  ENST00000497069 PMF1-004 156213026-156239718 nonsense_mediated_decay
  ENST00000606952 PMF1-010 156213007-156237291 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000368277ENST00000368279ENST00000497069ENST00000606952
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000368277 26.746±0.00 49.224±0.00 5.608±0.00 5.157±0.00 18.557±15.53 7.193±4.11 17.046±13.16 27.253±9.53 22.199±0.00 30.909±0.00 18.026±3.90 36.623±14.23 42.426±13.00 16.604±7.23
ENST00000368279 N/A 16.444±0.00 N/A N/A N/A 0.709±0.00 1.156±0.00 N/A 1.529±0.00 5.908±0.00 N/A 5.635±0.00 N/A N/A
ENST00000497069 N/A N/A N/A N/A 0.886±0.00 N/A N/A N/A N/A 1.616±0.00 N/A N/A N/A N/A
ENST00000606952 N/A N/A N/A N/A N/A N/A N/A N/A 1.055±0.00 N/A N/A N/A N/A 2.529±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000898 CIL_000898_0001 VISTA 1:155789635-156392759
CIL_0008P5 CIL_0008P5_0001 VISTA 1:155795688-156399252
CIL_0008JO CIL_0008JO_0001 VISTA 1:156202708-156805613

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0000444 IDA MIS12/MIND type complex
GO:0003713 IMP transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005667 TAS transcription factor complex
GO:0005829 TAS cytosol
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0007059 IMP chromosome segregation
GO:0007067 IEA mitotic nuclear division
GO:0043522 IPI leucine zipper domain binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077822 PMF1 polyamine-modulated factor 1 protein_coding Danio_rerio
ENSMUSG00000028066 Pmf1 polyamine-modulated factor 1 protein_coding Mus_musculus

Loading