C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin specific peptidase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000162607 USP1 9606 + 1:62436297-62451804 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000339950 USP1-001 62436655-62451804 protein_coding
  ENST00000371146 USP1-201 62436304-62451802 protein_coding
  ENST00000442679 USP1-003 62436298-62441580 protein_coding
  ENST00000452143 USP1-002 62436297-62443320 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000339950ENST00000371146
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000339950 3.013±0.00 3.523±0.00 2.441±0.00 1.205±0.03 1.465±0.81 1.028±0.88 2.891±0.00 1.593±0.21 4.176±1.64 1.787±0.00 5.685±3.88 2.855±1.29 10.079±1.42
ENST00000371146 N/A N/A 3.863±0.00 3.783±0.00 3.728±0.00 1.525±0.17 1.003±0.00 1.094±0.71 2.058±1.02 N/A 2.088±1.04 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002G2 CIL_0002G2_0001 CGP 1:62436297-62688368

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001501 IEA skeletal system development
GO:0004197 TAS cysteine-type endopeptidase activity
GO:0004221 IDA ubiquitin thiolesterase activity
GO:0004843 IDA ubiquitin-specific protease activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006281 TAS DNA repair
GO:0006282 IDA regulation of DNA repair
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0009411 IDA response to UV
GO:0016579 IDA protein deubiquitination
GO:0035520 IMP monoubiquitinated protein deubiquitination
GO:0036459 IEA ubiquitinyl hydrolase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056414 usp1 ubiquitin specific protease 1 protein_coding Danio_rerio
ENSMUSG00000028560 Usp1 ubiquitin specific peptidase 1 protein_coding Mus_musculus

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