C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000339950 USP1-001 ENSG00000162607 9606 + 1:62436655-62451804 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000339950
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000339950 3.013±0.00 3.523±0.00 2.441±0.00 1.205±0.03 1.465±0.81 1.028±0.88 2.891±0.00 1.593±0.21 4.176±1.64 1.787±0.00 5.685±3.88 2.855±1.29 10.079±1.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002G2 CIL_0002G2_0001 CGP 1:62436297-62688368

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IEA skeletal system development
GO:0004197 TAS cysteine-type endopeptidase activity
GO:0004221 IDA ubiquitin thiolesterase activity
GO:0004843 IDA ubiquitin-specific protease activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006281 TAS DNA repair
GO:0006282 IDA regulation of DNA repair
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0009411 IDA response to UV
GO:0016579 IDA protein deubiquitination
GO:0035520 IMP monoubiquitinated protein deubiquitination
GO:0036459 IEA ubiquitinyl hydrolase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000091358 Usp1-001 protein_coding Mus_musculus 0 3452
ENSMUST00000030289 Usp1-002 protein_coding Mus_musculus 0 3363
ENSMUST00000125104 Usp1-003 protein_coding Mus_musculus 0 507

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