C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin specific peptidase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028560 Usp1 10090 + 4:98923810-98935543 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030289 Usp1-002 98923810-98935543 protein_coding
  ENSMUST00000091358 Usp1-001 98923879-98935543 protein_coding
  ENSMUST00000125104 Usp1-003 98928097-98930881 protein_coding
  ENSMUST00000169053 Usp1-004 98923964-98928270 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030289ENSMUST00000091358ENSMUST00000169053
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030289 2.304±1.52 4.636±1.09 1.872±0.08 3.206±0.38 3.322±1.04 3.314±0.43 0.472±0.00 1.610±0.87 3.131±3.02 2.744±0.60 1.037±0.41 4.913±2.43 4.327±1.47 20.084±4.82
ENSMUST00000091358 3.811±2.73 6.862±0.08 2.347±0.00 5.645±2.82 3.480±1.95 4.427±2.18 0.824±0.20 2.174±0.83 5.045±4.64 4.253±0.30 1.370±0.41 9.332±7.84 6.801±1.73 25.889±2.62
ENSMUST00000169053 39.619±22.99 136.339±63.14 N/A N/A 70.852±44.49 44.107±9.79 5.635±0.00 13.810±4.51 6.237±1.55 41.681±21.46 N/A 109.968±29.75 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002G2 CIL_0002G2_0002 CGP 4:98923810-99120915

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0004221 ISS ubiquitin thiolesterase activity
GO:0004843 ISS ubiquitin-specific protease activity
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0006281 IEA DNA repair
GO:0006282 ISS regulation of DNA repair
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0009411 ISS response to UV
GO:0016579 ISS protein deubiquitination
GO:0035520 ISS monoubiquitinated protein deubiquitination
GO:0036459 IEA ubiquitinyl hydrolase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056414 usp1 ubiquitin specific protease 1 protein_coding Danio_rerio
ENSG00000162607 USP1 ubiquitin specific peptidase 1 protein_coding Homo_sapiens

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