C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: far upstream element (FUSE) binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000162613 FUBP1 9606 - 1:77944055-77979110 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000294623 FUBP1-001 77946482-77979087 nonsense_mediated_decay
  ENST00000370767 FUBP1-003 77948405-77979092 protein_coding
  ENST00000370768 FUBP1-002 77948405-77979086 protein_coding
  ENST00000421641 FUBP1-004 77965069-77979110 protein_coding
  ENST00000470287 FUBP1-013 77955255-77960785 processed_transcript
  ENST00000474632 FUBP1-006 77944055-77947692 processed_transcript
  ENST00000480673 FUBP1-009 77944055-77946576 processed_transcript
  ENST00000483894 FUBP1-010 77944055-77945895 processed_transcript
  ENST00000487684 FUBP1-012 77948970-77955458 processed_transcript
  ENST00000488814 FUBP1-005 77944055-77949267 processed_transcript
  ENST00000489495 FUBP1-011 77944055-77948333 processed_transcript
  ENST00000492405 FUBP1-007 77944055-77955282 processed_transcript
  ENST00000492724 FUBP1-008 77944055-77955339 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000294623ENST00000370767ENST00000370768ENST00000489495
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000294623 5.483±0.00 N/A 3.959±0.00 5.405±0.00 6.347±0.00 6.283±1.64 3.559±1.10 5.323±3.97 5.252±0.00 12.678±0.00 5.904±0.38 14.697±5.02 8.412±6.75 14.295±1.09
ENST00000370767 N/A N/A N/A N/A N/A N/A 1.284±0.00 N/A 2.985±0.00 N/A N/A N/A N/A N/A
ENST00000370768 7.906±0.00 11.037±0.00 4.406±0.00 5.707±0.00 6.616±2.95 7.424±0.34 5.705±1.22 3.596±1.80 3.843±1.67 9.845±3.90 7.981±0.00 9.671±2.93 8.869±1.15 9.986±0.00
ENST00000489495 2.061±0.00 6.323±0.00 N/A N/A N/A N/A 1.525±0.00 N/A 3.922±0.00 3.724±0.00 2.381±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YZ CIL_0008YZ_0001 VISTA 1:77533579-78136618
CIL_0007KB CIL_0007KB_0001 UCNEbase 1:77564480-77948632

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001205 IEA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003676 IEA nucleic acid binding
GO:0003697 TAS single-stranded DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0010628 IDA positive regulation of gene expression
GO:0044822 IDA poly(A) RNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029248 fubp1 far upstream element (FUSE) binding protein 1 protein_coding Danio_rerio
ENSMUSG00000028034 Fubp1 far upstream element (FUSE) binding protein 1 protein_coding Mus_musculus

Loading