C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: far upstream element (FUSE) binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000370768 FUBP1-002 ENSG00000162613 9606 - 1:77948405-77979086 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000370768
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000370768 7.906±0.00 11.037±0.00 4.406±0.00 5.707±0.00 6.616±2.95 7.424±0.34 5.705±1.22 3.596±1.80 3.843±1.67 9.845±3.90 7.981±0.00 9.671±2.93 8.869±1.15 9.986±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YZ CIL_0008YZ_0001 VISTA 1:77533579-78136618
CIL_0007KB CIL_0007KB_0001 UCNEbase 1:77564480-77948632

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001205 IEA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003676 IEA nucleic acid binding
GO:0003697 TAS single-stranded DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0010628 IDA positive regulation of gene expression
GO:0044822 IDA poly(A) RNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106121 Fubp1-201 protein_coding Mus_musculus 0 3118
ENSMUST00000166984 Fubp1-202 protein_coding Mus_musculus 0 3118

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