C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: actin related protein 2/3 complex, subunit 5, 16kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000162704 ARPC5 9606 - 1:183620846-183635757 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000294742 ARPC5-002 183626458-183635757 protein_coding
  ENST00000359856 ARPC5-001 183620846-183635726 protein_coding
  ENST00000367534 ARPC5-004 183623266-183635682 protein_coding
  ENST00000462965 ARPC5-003 183626194-183633958 processed_transcript
  ENST00000602490 ARPC5-005 183630325-183633309 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000294742ENST00000359856ENST00000367534ENST00000462965
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000294742 42.370±0.00 45.070±0.00 3.705±0.00 15.697±7.18 21.552±4.52 24.419±11.69 5.979±3.19 16.989±8.92 11.592±0.81 32.251±18.78 2.619±1.30 25.155±8.18 34.214±2.49 30.623±9.42
ENST00000359856 N/A 2.699±0.00 0.375±0.00 0.986±0.29 1.085±0.00 0.918±0.00 0.241±0.00 0.632±0.00 1.370±0.00 2.100±0.00 0.092±0.00 1.184±0.00 N/A N/A
ENST00000367534 35.428±0.00 N/A N/A N/A 11.102±0.00 10.416±0.00 4.176±0.00 8.318±0.00 11.544±0.00 15.293±0.00 N/A 71.505±44.15 38.500±0.00 53.472±0.00
ENST00000462965 8.032±0.00 9.635±0.00 1.096±0.00 4.642±0.88 9.082±1.23 7.457±3.12 2.691±2.06 6.973±4.16 3.936±1.60 16.838±10.97 0.948±0.25 11.151±6.91 37.230±3.60 13.230±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005200 IDA structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005737 TAS cytoplasm
GO:0005829 TAS cytosol
GO:0005856 IEA cytoskeleton
GO:0005885 IDA:IEA Arp2/3 protein complex
GO:0005925 IDA focal adhesion
GO:0006928 TAS cellular component movement
GO:0015629 TAS:IEA actin cytoskeleton
GO:0030036 TAS actin cytoskeleton organization
GO:0030833 IEA regulation of actin filament polymerization
GO:0034314 IDA:IEA Arp2/3 complex-mediated actin nucleation
GO:0038096 TAS Fc-gamma receptor signaling pathway involved in phagocytosis
GO:0042995 IEA cell projection
GO:0045087 TAS innate immune response
GO:0051015 IDA actin filament binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019062 arpc5b actin related protein 2/3 complex, subunit 5B protein_coding Danio_rerio
ENSDARG00000039142 arpc5a actin related protein 2/3 complex, subunit 5A protein_coding Danio_rerio
ENSMUSG00000008475 Arpc5 actin related protein 2/3 complex, subunit 5 protein_coding Mus_musculus
ENSMUSG00000057160 Gm16372 predicted pseudogene 16372 protein_coding Mus_musculus

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