C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin related protein 2/3 complex, subunit 5, 16kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000294742 ARPC5-002 ENSG00000162704 9606 - 1:183626458-183635757 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000294742
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000294742 42.370±0.00 45.070±0.00 3.705±0.00 15.697±7.18 21.552±4.52 24.419±11.69 5.979±3.19 16.989±8.92 11.592±0.81 32.251±18.78 2.619±1.30 25.155±8.18 34.214±2.49 30.623±9.42

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005200 IDA structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005737 TAS cytoplasm
GO:0005829 TAS cytosol
GO:0005885 IDA:IEA Arp2/3 protein complex
GO:0005925 IDA focal adhesion
GO:0006928 TAS cellular component movement
GO:0015629 TAS:IEA actin cytoskeleton
GO:0030036 TAS actin cytoskeleton organization
GO:0030833 IEA regulation of actin filament polymerization
GO:0034314 IDA:IEA Arp2/3 complex-mediated actin nucleation
GO:0038096 TAS Fc-gamma receptor signaling pathway involved in phagocytosis
GO:0042995 IEA cell projection
GO:0045087 TAS innate immune response
GO:0051015 IDA actin filament binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000077755 Arpc5-001 protein_coding Mus_musculus 0 1053
ENSMUST00000097536 Arpc5-003 protein_coding Mus_musculus 0 534
ENSMUST00000073088 Gm16372-201 protein_coding Mus_musculus 0 483
ENSMUST00000119412 Gm6500-001 processed_pseudogene Mus_musculus 0 363

Loading