C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: clarin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163646 CLRN1 9606 - 3:150926163-150972999 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000295911 CLRN1-003 150926163-150944236 protein_coding
  ENST00000327047 CLRN1-001 150926567-150972999 protein_coding
  ENST00000328863 CLRN1-006 150927936-150972708 protein_coding
  ENST00000468836 CLRN1-005 150928061-150972684 protein_coding
  ENST00000472224 CLRN1-004 150941415-150972714 retained_intron
  ENST00000485607 CLRN1-002 150928181-150944236 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyLiverPlacentaENST00000327047ENST00000328863ENST00000468836ENST00000485607
Transcript ID Kidney Liver Placenta
ENST00000327047 0.004±0.00 N/A N/A
ENST00000328863 N/A N/A 0.264±0.00
ENST00000468836 N/A 1.120±0.00 N/A
ENST00000485607 N/A N/A 0.270±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ID CIL_0002ID_0001 CGP 3:150926163-151437072

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005886 IDA plasma membrane
GO:0005902 IDA microvillus
GO:0007015 IDA actin filament organization
GO:0007601 IEA visual perception
GO:0007605 IMP sensory perception of sound
GO:0010592 IDA positive regulation of lamellipodium assembly
GO:0016021 IEA integral component of membrane
GO:0030027 IDA lamellipodium
GO:0045494 IMP photoreceptor cell maintenance
GO:0048870 IDA cell motility
GO:0050885 IEA neuromuscular process controlling balance
GO:0050896 IEA response to stimulus
GO:0050953 IMP sensory perception of light stimulus
GO:0050957 IMP equilibrioception
GO:0060088 IEA auditory receptor cell stereocilium organization
GO:0060117 IEA auditory receptor cell development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042863 clrn1 clarin 1 protein_coding Danio_rerio
ENSMUSG00000043850 Clrn1 clarin 1 protein_coding Mus_musculus

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