C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: clarin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000328863 CLRN1-006 ENSG00000163646 9606 - 3:150927936-150972708 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaENST00000328863
Transcript ID Placenta
ENST00000328863 0.264±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ID CIL_0002ID_0001 CGP 3:150926163-151437072

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005886 IDA plasma membrane
GO:0005902 IDA microvillus
GO:0007015 IDA actin filament organization
GO:0007601 IEA visual perception
GO:0007605 IMP sensory perception of sound
GO:0010592 IDA positive regulation of lamellipodium assembly
GO:0016021 IEA integral component of membrane
GO:0030027 IDA lamellipodium
GO:0045494 IMP photoreceptor cell maintenance
GO:0048870 IDA cell motility
GO:0050885 IEA neuromuscular process controlling balance
GO:0050896 IEA response to stimulus
GO:0050953 IMP sensory perception of light stimulus
GO:0050957 IMP equilibrioception
GO:0060088 IEA auditory receptor cell stereocilium organization
GO:0060117 IEA auditory receptor cell development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000051408 Clrn1-001 protein_coding Mus_musculus 0 403
ENSMUST00000055636 Clrn1-002 protein_coding Mus_musculus 0 351
ENSMUST00000072551 Clrn1-003 protein_coding Mus_musculus 0 348
ENSMUST00000161419 Clrn1-004 retained_intron Mus_musculus 3.00018e-42 176

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