C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: clarin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000327047 CLRN1-001 ENSG00000163646 9606 - 3:150926567-150972999 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyENST00000327047
Transcript ID Kidney
ENST00000327047 0.004±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ID CIL_0002ID_0001 CGP 3:150926163-151437072

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005886 IDA plasma membrane
GO:0005902 IDA microvillus
GO:0007015 IDA actin filament organization
GO:0007601 IEA visual perception
GO:0007605 IMP sensory perception of sound
GO:0010592 IDA positive regulation of lamellipodium assembly
GO:0016021 IEA integral component of membrane
GO:0030027 IDA lamellipodium
GO:0045494 IMP photoreceptor cell maintenance
GO:0048870 IDA cell motility
GO:0050896 IEA response to stimulus
GO:0050953 IMP sensory perception of light stimulus
GO:0050957 IMP equilibrioception

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000051408 Clrn1-001 protein_coding Mus_musculus 0 819
ENSMUST00000055636 Clrn1-002 protein_coding Mus_musculus 0 549
ENSMUST00000072551 Clrn1-003 protein_coding Mus_musculus 0 383
ENSMUST00000161419 Clrn1-004 retained_intron Mus_musculus 0 305

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