C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: clarin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000043850 Clrn1 10090 - 3:58844028-58885340 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000051408 Clrn1-001 58845981-58885340 protein_coding
  ENSMUST00000055636 Clrn1-002 58844028-58885212 protein_coding
  ENSMUST00000072551 Clrn1-003 58845215-58885212 protein_coding
  ENSMUST00000161419 Clrn1-004 58846363-58865797 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverOvaryPlacentaTestisENSMUST00000051408ENSMUST00000055636ENSMUST00000072551ENSMUST00000161419
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Ovary Placenta Testis
ENSMUST00000051408 N/A 0.139±0.00 0.066±0.04 N/A N/A 0.029±0.00 0.008±0.00 0.081±0.06 0.066±0.00 N/A
ENSMUST00000055636 0.047±0.02 0.062±0.02 0.028±0.00 N/A 0.029±0.00 0.010±0.00 0.020±0.00 0.088±0.07 0.019±0.03 N/A
ENSMUST00000072551 0.030±0.00 N/A 0.077±0.03 0.055±0.00 N/A N/A N/A 0.190±0.00 0.004±0.00 0.143±0.00
ENSMUST00000161419 N/A N/A N/A N/A N/A N/A 0.023±0.00 N/A 0.015±0.00 0.144±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ID CIL_0002ID_0002 CGP 3:58844028-59318410

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005886 ISO plasma membrane
GO:0005902 ISO microvillus
GO:0007015 ISO actin filament organization
GO:0007601 IEA visual perception
GO:0007605 IMP sensory perception of sound
GO:0010592 ISO positive regulation of lamellipodium assembly
GO:0016021 IEA integral component of membrane
GO:0030027 ISO lamellipodium
GO:0045494 IEA photoreceptor cell maintenance
GO:0048870 ISO cell motility
GO:0050885 IMP neuromuscular process controlling balance
GO:0050896 IEA response to stimulus
GO:0050953 IEA sensory perception of light stimulus
GO:0050957 IEA equilibrioception
GO:0060088 IMP auditory receptor cell stereocilium organization
GO:0060117 IMP auditory receptor cell development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042863 clrn1 clarin 1 protein_coding Danio_rerio
ENSG00000163646 CLRN1 clarin 1 protein_coding Homo_sapiens

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