C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163743 RCHY1 9606 - 4:75479037-75514764 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000324439 RCHY1-001 75479037-75514685 protein_coding
  ENST00000380840 RCHY1-005 75481469-75514286 protein_coding
  ENST00000504085 RCHY1-006 75482342-75514403 nonsense_mediated_decay
  ENST00000505105 RCHY1-003 75482008-75514312 nonsense_mediated_decay
  ENST00000505514 RCHY1-014 75490598-75509807 retained_intron
  ENST00000507014 RCHY1-012 75482538-75514297 protein_coding
  ENST00000512567 RCHY1-008 75482086-75494431 retained_intron
  ENST00000512706 RCHY1-011 75482413-75514430 protein_coding
  ENST00000513083 RCHY1-007 75491607-75514286 retained_intron
  ENST00000513257 RCHY1-004 75482538-75514286 protein_coding
  ENST00000513909 RCHY1-013 75482604-75514256 nonsense_mediated_decay
  ENST00000514021 RCHY1-009 75491911-75514764 processed_transcript
  ENST00000514589 RCHY1-002 75482008-75514418 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000324439ENST00000380840ENST00000505105ENST00000505514ENST00000507014ENST00000512567ENST00000512706ENST00000513083ENST00000513257ENST00000514589
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000324439 N/A N/A N/A 2.150±0.16 0.911±0.00 N/A N/A N/A 0.979±0.00 0.720±0.00 N/A 1.188±0.00 0.666±0.00 N/A
ENST00000380840 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.590±0.00 N/A N/A
ENST00000505105 2.900±0.00 4.791±0.00 N/A 6.302±0.00 5.735±0.00 4.854±0.00 6.950±0.00 7.362±0.00 2.534±0.00 6.065±0.00 3.784±0.00 3.998±0.00 2.742±0.47 7.930±0.00
ENST00000505514 N/A N/A N/A N/A N/A N/A N/A 2.734±0.00 N/A N/A N/A N/A N/A N/A
ENST00000507014 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.470±0.00 N/A
ENST00000512567 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.021±0.00
ENST00000512706 N/A N/A N/A N/A N/A 3.061±0.00 N/A N/A N/A N/A N/A 8.123±0.00 5.591±0.00 13.885±0.00
ENST00000513083 N/A N/A N/A N/A N/A 8.585±0.00 N/A N/A N/A N/A 3.134±0.00 N/A N/A N/A
ENST00000513257 N/A N/A N/A N/A N/A N/A 3.071±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000514589 N/A N/A 0.930±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006SD CIL_0006SD_0001 CGP 4:74933095-75514764

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000151 IDA ubiquitin ligase complex
GO:0002039 IPI p53 binding
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005102 IEA receptor binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0008270 IEA:IDA zinc ion binding
GO:0016567 IDA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0031398 IDA positive regulation of protein ubiquitination
GO:0032436 IDA positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0042787 IDA protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0042803 IPI protein homodimerization activity
GO:0046872 IEA metal ion binding
GO:0051865 IDA protein autoubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016710 rchy1 ring finger and CHY zinc finger domain containing 1 protein_coding Danio_rerio
ENSMUSG00000029397 Rchy1 ring finger and CHY zinc finger domain containing 1 protein_coding Mus_musculus

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