C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000505105 RCHY1-003 ENSG00000163743 9606 - 4:75482008-75514312 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000505105
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000505105 2.900±0.00 4.791±0.00 6.302±0.00 5.735±0.00 4.854±0.00 6.950±0.00 7.362±0.00 2.534±0.00 6.065±0.00 3.784±0.00 3.998±0.00 2.742±0.47 7.930±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006SD CIL_0006SD_0001 CGP 4:74933095-75514764

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000151 IDA ubiquitin ligase complex
GO:0002039 IPI p53 binding
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0008270 IEA:IDA zinc ion binding
GO:0016567 IDA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0031398 IDA positive regulation of protein ubiquitination
GO:0032436 IDA positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0042787 IDA protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0042803 IPI protein homodimerization activity
GO:0046872 IEA metal ion binding
GO:0051865 IDA protein autoubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031345 Rchy1-001 protein_coding Mus_musculus 0 691
ENSMUST00000140670 Rchy1-002 processed_transcript Mus_musculus 0 595
ENSMUST00000169948 Rchy1-004 protein_coding Mus_musculus 0 444
ENSMUST00000138351 Rchy1-003 retained_intron Mus_musculus 0 198

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