C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger and CHY zinc finger domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029397 Rchy1 10090 - 5:91948904-91963068 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031345 Rchy1-001 91948904-91963068 protein_coding
  ENSMUST00000138351 Rchy1-003 91951854-91953754 retained_intron
  ENSMUST00000140670 Rchy1-002 91948904-91962556 processed_transcript
  ENSMUST00000169948 Rchy1-004 91949001-91962735 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031345ENSMUST00000140670ENSMUST00000169948
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031345 11.049±2.84 7.690±1.49 15.749±1.89 10.674±5.80 7.979±1.50 9.682±2.24 8.982±0.76 12.071±1.08 10.311±2.29 8.906±2.26 8.325±1.49 11.919±4.53 8.278±4.48 9.938±5.50
ENSMUST00000140670 N/A N/A N/A 1.588±0.00 N/A N/A N/A N/A N/A N/A N/A 1.801±0.25 0.548±0.00 0.820±0.00
ENSMUST00000169948 4.188±1.84 8.044±1.85 8.398±0.73 5.451±3.04 11.306±4.45 6.286±1.92 3.225±0.85 5.327±1.63 7.282±4.10 9.312±1.72 5.021±1.29 9.299±3.74 5.915±2.94 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006SD CIL_0006SD_0002 CGP 5:91517615-91963068

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000151 ISS ubiquitin ligase complex
GO:0002039 IEA p53 binding
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005102 IEA receptor binding
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0016567 ISS protein ubiquitination
GO:0016874 IEA ligase activity
GO:0031398 ISS positive regulation of protein ubiquitination
GO:0032436 ISS positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0042787 ISS protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0042803 IEA protein homodimerization activity
GO:0051865 ISS protein autoubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016710 rchy1 ring finger and CHY zinc finger domain containing 1 protein_coding Danio_rerio
ENSG00000163743 RCHY1 ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase protein_coding Homo_sapiens

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