C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006SD_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000169116-ENSG00000163743 CGP 9606 4:74933095-75514764
GeneTranscriptPositionBiotype
ENSG00000163743 (RCHY1)
ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase 		ENST00000324439 (RCHY1-001) 75479037-75514685 protein_coding
ENST00000380840 (RCHY1-005) 75481469-75514286 protein_coding
ENST00000504085 (RCHY1-006) 75482342-75514403 nonsense_mediated_decay
ENST00000505105 (RCHY1-003) 75482008-75514312 nonsense_mediated_decay
ENST00000505514 (RCHY1-014) 75490598-75509807 retained_intron
ENST00000507014 (RCHY1-012) 75482538-75514297 protein_coding
ENST00000512567 (RCHY1-008) 75482086-75494431 retained_intron
ENST00000512706 (RCHY1-011) 75482413-75514430 protein_coding
ENST00000513083 (RCHY1-007) 75491607-75514286 retained_intron
ENST00000513257 (RCHY1-004) 75482538-75514286 protein_coding
ENST00000513909 (RCHY1-013) 75482604-75514256 nonsense_mediated_decay
ENST00000514021 (RCHY1-009) 75491911-75514764 processed_transcript
ENST00000514589 (RCHY1-002) 75482008-75514418 retained_intron
ENSG00000169116 (PARM1)
prostate androgen-regulated mucin-like protein 1 		ENST00000307428 (PARM1-001) 74933116-75050113 protein_coding
ENST00000513238 (PARM1-002) 74933095-75050115 protein_coding
ENSG00000174796 (THAP6)
THAP domain containing 6 		ENST00000311638 (THAP6-001) 75514473-75530026 protein_coding
ENST00000380837 (THAP6-002) 75514473-75530026 protein_coding
ENST00000502620 (THAP6-013) 75514479-75550473 protein_coding
ENST00000503831 (THAP6-012) 75514489-75522050 retained_intron
ENST00000504190 (THAP6-005) 75514473-75543055 protein_coding
ENST00000504218 (THAP6-009) 75514218-75516789 protein_coding
ENST00000504384 (THAP6-010) 75514438-75517720 retained_intron
ENST00000506261 (THAP6-008) 75513946-75516931 protein_coding
ENST00000507556 (THAP6-006) 75514473-75542959 protein_coding
ENST00000507557 (THAP6-011) 75514444-75544440 protein_coding
ENST00000507885 (THAP6-007) 75514473-75544662 protein_coding
ENST00000508105 (THAP6-003) 75514473-75522582 protein_coding
ENST00000514480 (THAP6-004) 75514520-75527214 protein_coding
ENSG00000248165 (RP11-44F21.2)
 ENST00000513770 (RP11-44F21.2-001) 74993877-75034824 antisense
ENSG00000248646 (RP11-567N4.2)
 ENST00000510744 (RP11-567N4.2-001) 75361207-75434449 lincRNA
ENSG00000249717 (RP11-44F21.3)
 ENST00000507517 (RP11-44F21.3-002) 74965171-74970124 antisense
ENST00000508031 (RP11-44F21.3-001) 74955974-74970362 antisense
ENSG00000250315 (RP11-44F21.4)
 ENST00000515177 (RP11-44F21.4-001) 75101491-75101861 transcribed_processed_pseudogene
ENST00000598794 (RP11-44F21.4-002) 75101477-75101943 processed_transcript
ENSG00000251185 (RP11-542G1.1)
 ENST00000505930 (RP11-542G1.1-001) 75269068-75361182 lincRNA
ENSG00000251383 (RP11-542G1.3)
 ENST00000512043 (RP11-542G1.3-001) 75354076-75362566 lincRNA
ENSG00000251454 (RP11-542G1.2)
 ENST00000509215 (RP11-542G1.2-001) 75341279-75359024 lincRNA
ENSG00000260265 (RP11-44F21.5)
 ENST00000561705 (RP11-44F21.5-002) 75081702-75084717 lincRNA
ENST00000562355 (RP11-44F21.5-003) 75082019-75083496 lincRNA
ENST00000563602 (RP11-44F21.5-004) 75082037-75083668 lincRNA
ENST00000567197 (RP11-44F21.5-001) 75081925-75082495 lincRNA
CIL_0006SD_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034981-ENSMUSG00000029397 CGP 10090 5:91517615-91963068
GeneTranscriptPositionBiotype
ENSMUSG00000029397 (Rchy1)
ring finger and CHY zinc finger domain containing 1 		ENSMUST00000031345 (Rchy1-001) 91948904-91963068 protein_coding
ENSMUST00000138351 (Rchy1-003) 91951854-91953754 retained_intron
ENSMUST00000140670 (Rchy1-002) 91948904-91962556 processed_transcript
ENSMUST00000169948 (Rchy1-004) 91949001-91962735 protein_coding
ENSMUSG00000034981 (Parm1)
prostate androgen-regulated mucin-like protein 1 		ENSMUST00000040576 (Parm1-001) 91517615-91626894 protein_coding
ENSMUSG00000096726 (Gm5558)
predicted gene 5558 		ENSMUST00000178933 (Gm5558-201) 91806576-91807073 processed_pseudogene
ENSMUSG00000099468 (RP23-17D18.2)
predicted gene 28271 		ENSMUST00000191369 (RP23-17D18.2-001) 91763325-91767914 lincRNA
ENSMUSG00000101978 (RP24-266G11.1)
RIKEN cDNA 1700063O14 gene 		ENSMUST00000187067 (RP24-266G11.1-001) 91766242-91767300 sense_intronic

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000163743 ENST00000324439 N/A N/A N/A 2.150±0.16 0.911±0.00 N/A N/A N/A 0.979±0.00 0.720±0.00 N/A 1.188±0.00 0.666±0.00 N/A
ENST00000380840 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.590±0.00 N/A N/A
ENST00000504085 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505105 2.900±0.00 4.791±0.00 N/A 6.302±0.00 5.735±0.00 4.854±0.00 6.950±0.00 7.362±0.00 2.534±0.00 6.065±0.00 3.784±0.00 3.998±0.00 2.742±0.47 7.930±0.00
ENST00000505514 N/A N/A N/A N/A N/A N/A N/A 2.734±0.00 N/A N/A N/A N/A N/A N/A
ENST00000507014 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.470±0.00 N/A
ENST00000512567 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.021±0.00
ENST00000512706 N/A N/A N/A N/A N/A 3.061±0.00 N/A N/A N/A N/A N/A 8.123±0.00 5.591±0.00 13.885±0.00
ENST00000513083 N/A N/A N/A N/A N/A 8.585±0.00 N/A N/A N/A N/A 3.134±0.00 N/A N/A N/A
ENST00000513257 N/A N/A N/A N/A N/A N/A 3.071±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000513909 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514021 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514589 N/A N/A 0.930±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000169116 ENST00000307428 23.864±0.00 28.934±0.00 10.415±0.00 12.165±0.03 11.333±0.58 15.189±1.30 14.299±4.08 9.134±8.98 10.737±10.55 8.711±0.66 3.184±1.28 4.121±2.73 24.253±4.92 18.617±11.32
ENST00000513238 N/A N/A N/A 5.313±0.00 2.204±0.00 3.040±0.00 N/A 2.383±2.18 N/A N/A N/A 1.002±0.00 N/A 6.730±0.00
ENSG00000174796 ENST00000311638 N/A N/A 1.112±0.00 1.544±0.00 N/A N/A 1.556±0.51 1.412±0.00 1.295±0.16 N/A N/A 1.766±0.19 0.951±0.04 2.678±0.00
ENST00000380837 N/A N/A N/A N/A 1.279±0.00 1.392±0.00 N/A N/A 0.995±0.00 0.843±0.00 1.018±0.00 N/A 1.202±0.00 4.162±0.00
ENST00000502620 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503831 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504190 N/A N/A 1.432±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504218 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504384 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506261 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507556 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507557 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507885 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514480 N/A N/A N/A N/A N/A N/A N/A 2.796±0.00 N/A N/A N/A 3.329±0.00 N/A N/A
ENSG00000248165 ENST00000513770 N/A 0.020±0.00 N/A 0.973±0.00 N/A 1.737±0.00 0.217±0.11 N/A N/A N/A N/A N/A N/A 0.088±0.00
ENSG00000248646 ENST00000510744 N/A N/A N/A 0.111±0.00 N/A N/A N/A N/A N/A N/A 0.210±0.00 N/A N/A N/A
ENSG00000249717 ENST00000507517 N/A N/A N/A 0.048±0.00 0.644±0.56 N/A 0.068±0.00 N/A 0.532±0.00 1.940±0.00 N/A 0.039±0.00 N/A 0.076±0.03
ENST00000508031 N/A N/A N/A 0.022±0.02 0.258±0.23 N/A 0.035±0.00 0.033±0.00 0.378±0.00 0.941±0.00 N/A 0.262±0.25 0.023±0.00 0.038±0.00
ENSG00000250315 ENST00000515177 N/A N/A N/A N/A N/A 0.217±0.00 N/A N/A N/A N/A N/A 0.129±0.00 N/A N/A
ENST00000598794 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000251185 ENST00000505930 N/A 0.157±0.00 N/A N/A N/A 0.076±0.05 N/A N/A N/A 0.026±0.00 0.176±0.00 N/A 0.208±0.04 N/A
ENSG00000251383 ENST00000512043 0.030±0.00 N/A N/A 0.092±0.00 0.152±0.00 0.046±0.00 0.009±0.00 N/A N/A N/A N/A N/A N/A 0.036±0.00
ENSG00000251454 ENST00000509215 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.066±0.00 N/A
ENSG00000260265 ENST00000561705 0.026±0.00 N/A 0.536±0.00 N/A 0.557±0.00 0.493±0.07 0.090±0.00 0.260±0.00 N/A 0.059±0.00 N/A 0.241±0.15 N/A N/A
ENST00000562355 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.341±0.22 N/A 0.529±0.21 N/A N/A
ENST00000563602 N/A N/A N/A N/A N/A 1.092±0.00 0.237±0.00 N/A N/A 0.442±0.00 N/A 0.769±0.00 N/A N/A
ENST00000567197 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.414±0.18 0.090±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029397 ENSMUST00000031345 11.049±2.84 7.690±1.49 15.749±1.89 10.674±5.80 7.979±1.50 9.682±2.24 8.982±0.76 12.071±1.08 10.311±2.29 8.906±2.26 8.325±1.49 11.919±4.53 8.278±4.48 9.938±5.50
ENSMUST00000138351 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140670 N/A N/A N/A 1.588±0.00 N/A N/A N/A N/A N/A N/A N/A 1.801±0.25 0.548±0.00 0.820±0.00
ENSMUST00000169948 4.188±1.84 8.044±1.85 8.398±0.73 5.451±3.04 11.306±4.45 6.286±1.92 3.225±0.85 5.327±1.63 7.282±4.10 9.312±1.72 5.021±1.29 9.299±3.74 5.915±2.94 N/A
ENSMUSG00000034981 ENSMUST00000040576 10.779±1.39 74.436±17.57 19.109±2.33 2.746±1.68 14.378±2.11 46.993±21.25 17.956±1.94 3.774±0.22 0.233±0.22 3.605±0.36 7.040±0.57 5.929±1.33 24.805±19.77 0.432±0.15
ENSMUSG00000096726 ENSMUST00000178933 N/A N/A 0.067±0.02 0.138±0.13 1.016±0.00 N/A N/A 0.182±0.00 0.085±0.07 N/A N/A 0.450±0.05 0.185±0.16 N/A
ENSMUSG00000099468 ENSMUST00000191369 N/A N/A N/A 0.494±0.45 N/A N/A N/A N/A N/A N/A N/A 0.134±0.00 N/A 0.139±0.00
ENSMUSG00000101978 ENSMUST00000187067 N/A N/A N/A 0.068±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.170±0.06

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