C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: C-type lectin domain family 3, member B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163815 CLEC3B 9606 + 3:45001548-45036071 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000296130 CLEC3B-001 45026183-45036071 protein_coding
  ENST00000428034 CLEC3B-002 45030130-45036068 protein_coding
  ENST00000490386 CLEC3B-003 45001548-45036071 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000296130ENST00000428034ENST00000490386
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000296130 32.532±0.00 33.761±0.00 3.097±0.00 7.501±4.68 147.907±142.87 20.588±12.93 20.729±17.41 15.470±8.12 21.188±3.77 88.684±70.76 7.559±0.00 20.177±20.23 352.273±162.49 101.180±34.81
ENST00000428034 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 39.859±8.34
ENST00000490386 15.811±0.00 24.100±0.00 N/A N/A 100.204±0.00 13.372±0.00 N/A 21.215±0.00 N/A N/A 6.721±0.00 N/A 89.450±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00073X CIL_00073X_0001 CGP 3:44915257-45036066
CIL_00041W CIL_00041W_0002 CGP 3:44975241-45036071
CIL_0001W7 CIL_0001W7_0003 CGP 3:45001548-45146422

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001501 IEA skeletal system development
GO:0001503 IEP ossification
GO:0001652 IDA granular component
GO:0005509 IDA calcium ion binding
GO:0005576 NAS extracellular region
GO:0005615 IDA extracellular space
GO:0005737 IDA cytoplasm
GO:0008201 IDA heparin binding
GO:0010756 ISS positive regulation of plasminogen activation
GO:0030246 IEA carbohydrate binding
GO:0030282 IEP bone mineralization
GO:0031012 ISS extracellular matrix
GO:0036143 IPI kringle domain binding
GO:0070062 IDA extracellular vesicular exosome
GO:0071310 IEP cellular response to organic substance
GO:0071560 IEP cellular response to transforming growth factor beta stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074394 CABZ01049058.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000076541 clec3ba C-type lectin domain family 3, member Ba protein_coding Danio_rerio
ENSMUSG00000025784 Clec3b C-type lectin domain family 3, member b protein_coding Mus_musculus

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