C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: FYVE and coiled-coil domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163820 FYCO1 9606 - 3:45917899-45995824 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000296137 FYCO1-001 45917904-45995815 protein_coding
  ENST00000433878 FYCO1-003 45917904-45958572 protein_coding
  ENST00000438446 FYCO1-006 45921585-45958661 protein_coding
  ENST00000471739 FYCO1-005 45984581-45995824 retained_intron
  ENST00000535325 FYCO1-201 45917899-45995824 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000296137ENST00000433878ENST00000535325
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000296137 10.545±0.00 6.533±0.00 0.891±0.00 1.121±0.78 5.607±2.23 8.076±6.89 20.883±17.40 3.485±0.00 2.840±1.20 3.422±2.17 17.544±7.17 5.993±5.59 2.096±0.09 3.163±2.38
ENST00000433878 N/A 5.478±0.00 N/A 0.108±0.00 5.282±0.00 11.168±0.00 14.411±0.00 2.437±0.00 1.021±0.00 5.062±0.00 7.508±2.24 4.327±2.16 1.366±0.03 0.553±0.00
ENST00000535325 N/A N/A N/A N/A N/A N/A N/A 0.912±0.00 2.021±0.00 N/A 1.928±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003OM CIL_0003OM_0001 CGP 3:45917899-45995824

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005515 IPI protein binding
GO:0005764 IDA lysosome
GO:0005770 IDA late endosome
GO:0005776 IDA autophagic vacuole
GO:0006810 IEA transport
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0031410 IEA cytoplasmic vesicle
GO:0046872 IEA metal ion binding
GO:0072383 IMP plus-end-directed vesicle transport along microtubule

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056689 fyco1a FYVE and coiled-coil domain containing 1a protein_coding Danio_rerio
ENSDARG00000078022 FYCO1 (2 of 2) FYVE and coiled-coil domain containing 1 protein_coding Danio_rerio
ENSMUSG00000025241 Fyco1 FYVE and coiled-coil domain containing 1 protein_coding Mus_musculus

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