Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info
Description:	FYVE and coiled-coil domain containing 1
Gene Accession	Gene Name	Tax ID	Strand	Position	Gene Biotype
ENSMUSG00000025241	Fyco1	10090	-	9:123789510-123851899	protein_coding
	Transcript Accession		Transcript Name	Position	Transcript Biotype
	ENSMUST00000084715		Fyco1-001	123789886-123851566	protein_coding
	ENSMUST00000167595		Fyco1-201	123789510-123851899	protein_coding
	ENSMUST00000183700		Fyco1-003	123838182-123851886	retained_intron
	ENSMUST00000184082		Fyco1-002	123830013-123851881	protein_coding

Expression Patterns

Transcript ID	Adipose	Adrenal	Bladder	Brain	Breast	Colon	Heart	Kidney	Liver	Lung	Muscle	Ovary	Placenta	Testis
ENSMUST00000084715	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	5.314±0.00	1.588±0.00	5.487±0.00
ENSMUST00000167595	6.001±1.42	6.438±1.78	7.252±1.66	2.980±1.30	5.502±2.12	3.977±0.43	17.345±8.25	4.628±0.53	3.140±1.14	7.821±0.76	31.341±3.19	5.446±2.74	3.104±1.39	10.710±2.51

Conserved Regions
Region ID	Sub-Region	Region Type	Position
CIL_0003OM	CIL_0003OM_0002	CGP	9:123789510-123851899

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0005515	IEA	protein binding
GO:0005764	ISS	lysosome
GO:0005770	ISS	late endosome
GO:0005776	ISS	autophagic vacuole
GO:0016020	IEA	membrane
GO:0016021	IEA	integral component of membrane
GO:0031410	IEA	cytoplasmic vesicle
GO:0046872	IEA	metal ion binding
GO:0072383	ISS	plus-end-directed vesicle transport along microtubule

Homologs
ENSEMBL Accession	Gene Name	Description	Biotype	Species
ENSDARG00000056689	fyco1a	FYVE and coiled-coil domain containing 1a	protein_coding	Danio_rerio
ENSDARG00000078022	FYCO1 (2 of 2)	FYVE and coiled-coil domain containing 1	protein_coding	Danio_rerio
ENSG00000163820	FYCO1	FYVE and coiled-coil domain containing 1	protein_coding	Homo_sapiens

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