C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polymerase (RNA) II (DNA directed) polypeptide H
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163882 POLR2H 9606 + 3:184361718-184368596 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000412877 POLR2H-002 184361723-184363527 protein_coding
  ENST00000429568 POLR2H-009 184363434-184368596 protein_coding
  ENST00000430783 POLR2H-006 184363002-184368593 protein_coding
  ENST00000438240 POLR2H-003 184361789-184368550 protein_coding
  ENST00000443489 POLR2H-007 184363361-184368591 protein_coding
  ENST00000452961 POLR2H-008 184363403-184368533 protein_coding
  ENST00000455712 POLR2H-005 184362615-184368287 protein_coding
  ENST00000456318 POLR2H-001 184361718-184368594 protein_coding
  ENST00000460083 POLR2H-004 184362443-184363249 processed_transcript
  ENST00000476003 POLR2H-012 184366515-184368538 retained_intron
  ENST00000488213 POLR2H-010 184364451-184368434 retained_intron
  ENST00000489043 POLR2H-013 184364955-184368253 retained_intron
  ENST00000490958 POLR2H-011 184365007-184365523 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000429568ENST00000430783ENST00000438240ENST00000443489ENST00000452961ENST00000455712ENST00000456318ENST00000476003ENST00000488213ENST00000489043
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000429568 N/A N/A N/A 0.976±0.00 N/A 3.292±0.00 1.058±0.00 N/A 2.854±0.00 2.307±1.38 N/A 10.770±1.29 5.263±2.39 3.323±0.00
ENST00000430783 N/A 8.887±0.00 0.578±0.00 0.954±0.00 3.352±0.00 N/A 2.717±0.00 N/A N/A N/A 2.082±0.00 N/A 3.921±0.00 N/A
ENST00000438240 N/A N/A N/A 0.804±0.00 5.367±0.00 N/A N/A N/A N/A 4.634±0.00 N/A N/A N/A N/A
ENST00000443489 N/A N/A N/A N/A N/A N/A N/A 1.818±0.00 N/A N/A N/A N/A N/A N/A
ENST00000452961 4.703±0.00 7.913±0.00 0.704±0.00 3.523±1.03 N/A 6.902±0.00 N/A 14.588±13.01 4.778±3.79 5.350±3.07 8.913±0.00 14.906±2.31 8.262±3.09 5.026±1.91
ENST00000455712 5.733±0.00 10.429±0.00 N/A 5.926±0.00 7.145±0.00 N/A 3.657±0.00 N/A 2.737±0.00 N/A N/A 18.074±12.86 8.498±0.00 8.185±0.93
ENST00000456318 4.247±0.00 N/A N/A 3.373±0.00 N/A 3.775±0.31 1.651±0.00 8.956±0.00 0.734±0.00 2.210±1.24 1.370±0.00 19.982±0.28 7.530±2.21 3.132±1.21
ENST00000476003 N/A N/A N/A 2.782±0.00 1.967±0.00 N/A 1.109±0.00 N/A 2.530±0.00 N/A 1.355±0.00 N/A N/A N/A
ENST00000488213 N/A 4.726±0.00 1.394±0.00 N/A 1.446±0.00 4.365±2.04 N/A 1.541±0.00 1.341±0.03 4.070±0.00 N/A 11.973±6.00 1.929±0.00 3.612±0.00
ENST00000489043 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.068±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005G3 CIL_0005G3_0001 CGP 3:184135038-184684758
CIL_00056X CIL_00056X_0001 CGP 3:184346185-184368596
CIL_00056Y CIL_00056Y_0001 CGP 3:184361718-184378144

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0001054 IBA RNA polymerase I activity
GO:0001055 IBA RNA polymerase II activity
GO:0001056 IBA RNA polymerase III activity
GO:0003677 IEA DNA binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005665 IDA DNA-directed RNA polymerase II, core complex
GO:0005666 IBA DNA-directed RNA polymerase III complex
GO:0005736 IBA DNA-directed RNA polymerase I complex
GO:0005829 TAS cytosol
GO:0006281 TAS DNA repair
GO:0006283 TAS transcription-coupled nucleotide-excision repair
GO:0006289 TAS nucleotide-excision repair
GO:0006351 IEA transcription, DNA-templated
GO:0006360 TAS transcription from RNA polymerase I promoter
GO:0006361 TAS transcription initiation from RNA polymerase I promoter
GO:0006362 TAS transcription elongation from RNA polymerase I promoter
GO:0006363 TAS termination of RNA polymerase I transcription
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0006370 TAS 7-methylguanosine mRNA capping
GO:0006383 TAS transcription from RNA polymerase III promoter
GO:0006385 TAS transcription elongation from RNA polymerase III promoter
GO:0006386 TAS termination of RNA polymerase III transcription
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0032481 TAS positive regulation of type I interferon production
GO:0045087 TAS innate immune response
GO:0050434 TAS positive regulation of viral transcription

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038505 polr2h info polymerase (RNA) II (DNA directed) polypeptide H protein_coding Danio_rerio
ENSMUSG00000021018 Polr2h polymerase (RNA) II (DNA directed) polypeptide H protein_coding Mus_musculus

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