C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: UV-stimulated scaffold protein A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163945 UVSSA 9606 + 4:1347266-1388049 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000389851 UVSSA-001 1347316-1387944 protein_coding
  ENST00000503548 UVSSA-006 1376034-1388049 nonsense_mediated_decay
  ENST00000505716 UVSSA-009 1354507-1355214 retained_intron
  ENST00000507422 UVSSA-010 1384812-1385909 processed_transcript
  ENST00000507531 UVSSA-003 1347706-1386244 protein_coding
  ENST00000511216 UVSSA-002 1347266-1386412 protein_coding
  ENST00000511563 UVSSA-004 1366077-1386258 protein_coding
  ENST00000512728 UVSSA-005 1374907-1386414 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000389851ENST00000503548ENST00000507531ENST00000511216
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000389851 0.643±0.00 1.483±0.00 N/A 0.598±0.00 N/A 0.472±0.00 0.473±0.23 0.543±0.00 N/A N/A N/A 0.464±0.00 0.538±0.00 N/A
ENST00000503548 0.301±0.00 N/A N/A N/A 0.547±0.00 N/A 0.193±0.00 0.503±0.00 N/A 0.202±0.00 0.370±0.00 0.517±0.00 0.208±0.00 6.517±0.00
ENST00000507531 N/A N/A N/A N/A 0.421±0.00 N/A N/A N/A N/A 0.458±0.00 N/A 1.167±0.00 0.134±0.00 5.861±0.00
ENST00000511216 N/A N/A 0.328±0.00 0.735±0.00 N/A N/A N/A N/A 0.775±0.00 0.535±0.00 N/A N/A N/A 2.750±1.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006LM CIL_0006LM_0001 CGP 4:1289851-1388049
CIL_0007TX CIL_0007TX_0001 VISTA 4:1311752-1912379

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000993 IMP RNA polymerase II core binding
GO:0005515 IPI protein binding
GO:0005694 IDA chromosome
GO:0006283 IMP transcription-coupled nucleotide-excision repair
GO:0009411 IMP response to UV
GO:0016567 IMP protein ubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004958 uvssa UV-stimulated scaffold protein A protein_coding Danio_rerio
ENSMUSG00000037355 Uvssa UV stimulated scaffold protein A protein_coding Mus_musculus

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