C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: UV stimulated scaffold protein A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037355 Uvssa 10090 + 5:33378549-33419754 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000087864 Uvssa-001 33378696-33419754 protein_coding
  ENSMUST00000131752 Uvssa-002 33378696-33419754 nonsense_mediated_decay
  ENSMUST00000153980 Uvssa-003 33378549-33410519 retained_intron
  ENSMUST00000185821 Uvssa-004 33378772-33419754 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000087864ENSMUST00000131752ENSMUST00000153980ENSMUST00000185821
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087864 2.129±1.10 1.468±0.48 2.029±0.05 1.450±0.13 1.011±0.13 0.770±0.00 0.569±0.15 2.029±0.55 1.302±0.41 2.470±0.69 0.365±0.16 2.037±1.20 0.923±0.28 0.925±0.01
ENSMUST00000131752 N/A 0.707±0.20 0.980±0.00 0.323±0.00 N/A N/A N/A N/A 0.386±0.10 0.558±0.00 N/A 1.191±0.39 0.512±0.35 N/A
ENSMUST00000153980 N/A 1.288±0.00 N/A N/A 1.608±0.00 N/A N/A 0.596±0.00 0.402±0.00 0.800±0.08 N/A 0.892±0.00 N/A N/A
ENSMUST00000185821 N/A N/A N/A 1.663±0.00 N/A N/A N/A N/A 0.277±0.05 N/A 0.372±0.08 2.200±0.90 2.381±0.05 1.416±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TX CIL_0007TX_0002 VISTA 5:33275293-33875875
CIL_0006LM CIL_0006LM_0002 CGP 5:33335572-33419754

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000993 ISS RNA polymerase II core binding
GO:0005515 IEA protein binding
GO:0005694 ISS chromosome
GO:0006283 ISS transcription-coupled nucleotide-excision repair
GO:0009411 ISS response to UV
GO:0016567 ISS protein ubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004958 uvssa UV-stimulated scaffold protein A protein_coding Danio_rerio
ENSG00000163945 UVSSA UV-stimulated scaffold protein A protein_coding Homo_sapiens

Loading