C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: UV-stimulated scaffold protein A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000511216 UVSSA-002 ENSG00000163945 9606 + 4:1347266-1386412 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverLungTestisENST00000511216
Transcript ID Bladder Brain Liver Lung Testis
ENST00000511216 0.328±0.00 0.735±0.00 0.775±0.00 0.535±0.00 2.750±1.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006LM CIL_0006LM_0001 CGP 4:1289851-1388049
CIL_0007TX CIL_0007TX_0001 VISTA 4:1311752-1912379

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000993 IMP RNA polymerase II core binding
GO:0005515 IPI protein binding
GO:0005694 IDA chromosome
GO:0006283 IMP transcription-coupled nucleotide-excision repair
GO:0009411 IMP response to UV
GO:0016567 IMP protein ubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000185821 Uvssa-004 protein_coding Mus_musculus 0 1177
ENSMUST00000087864 Uvssa-001 protein_coding Mus_musculus 0 1177
ENSMUST00000153980 Uvssa-003 retained_intron Mus_musculus 0 787
ENSMUST00000131752 Uvssa-002 nonsense_mediated_decay Mus_musculus 0 782

Loading