C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: low density lipoprotein receptor-related protein associated protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163956 LRPAP1 9606 - 4:3506376-3532559 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000296325 LRPAP1-004 3512933-3532149 processed_transcript
  ENST00000500728 LRPAP1-001 3506376-3532559 protein_coding
  ENST00000509198 LRPAP1-002 3517661-3532422 retained_intron
  ENST00000515119 LRPAP1-003 3515882-3532416 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000296325ENST00000500728ENST00000509198ENST00000515119
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000296325 39.064±0.00 53.767±0.00 13.675±0.00 44.647±24.39 35.899±23.41 31.664±24.15 37.527±29.94 46.820±23.83 26.172±18.43 40.043±29.98 23.555±17.47 43.655±37.49 104.346±52.74 88.588±26.27
ENST00000500728 2.387±0.00 3.205±0.00 0.939±0.00 3.705±0.97 2.026±1.09 1.660±0.88 3.577±0.00 2.913±1.52 1.428±0.63 1.839±0.71 1.692±0.80 3.035±1.59 17.160±4.12 7.300±3.68
ENST00000509198 N/A 13.832±0.00 N/A 6.496±0.00 3.545±0.00 15.087±0.00 13.626±7.45 N/A 9.152±0.00 14.556±0.00 3.839±0.00 13.177±7.29 71.674±24.37 72.963±0.00
ENST00000515119 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.681±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001XD CIL_0001XD_0001 CGP 4:3463311-3532559

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004873 TAS asialoglycoprotein receptor activity
GO:0005515 IPI protein binding
GO:0005576 IDA extracellular region
GO:0005783 IDA:IEA endoplasmic reticulum
GO:0005886 IDA plasma membrane
GO:0006457 TAS protein folding
GO:0006898 TAS receptor-mediated endocytosis
GO:0008201 IEA heparin binding
GO:0010916 IDA negative regulation of very-low-density lipoprotein particle clearance
GO:0016021 TAS integral component of membrane
GO:0016192 TAS vesicle-mediated transport
GO:0031982 IEA vesicle
GO:0032091 IDA negative regulation of protein binding
GO:0035473 IEA lipase binding
GO:0048019 IDA receptor antagonist activity
GO:0048237 IEA rough endoplasmic reticulum lumen
GO:0050750 IDA:IEA low-density lipoprotein particle receptor binding
GO:0051082 TAS unfolded protein binding
GO:0070326 IPI very-low-density lipoprotein particle receptor binding
GO:1900116 IDA extracellular negative regulation of signal transduction
GO:1900222 IGI negative regulation of beta-amyloid clearance

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000033604 lrpap1 low density lipoprotein receptor-related protein associated protein 1 protein_coding Danio_rerio
ENSMUSG00000029103 Lrpap1 low density lipoprotein receptor-related protein associated protein 1 protein_coding Mus_musculus

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