C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: low density lipoprotein receptor-related protein associated protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029103 Lrpap1 10090 - 5:35091490-35105766 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030986 Lrpap1-001 35091490-35105766 protein_coding
  ENSMUST00000132754 Lrpap1-003 35102509-35104540 protein_coding
  ENSMUST00000135207 Lrpap1-006 35093295-35097722 retained_intron
  ENSMUST00000147028 Lrpap1-005 35097598-35105689 retained_intron
  ENSMUST00000152028 Lrpap1-002 35102128-35105696 retained_intron
  ENSMUST00000153664 Lrpap1-004 35093069-35102514 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030986ENSMUST00000135207ENSMUST00000147028ENSMUST00000152028ENSMUST00000153664
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030986 34.302±7.34 21.753±3.26 17.813±0.26 20.507±12.60 16.376±1.46 15.848±2.23 8.785±0.55 76.023±3.42 10.556±2.82 25.653±1.85 9.304±0.63 32.079±3.53 50.320±32.01 12.618±1.68
ENSMUST00000135207 29.826±0.00 29.892±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147028 N/A N/A N/A 71.731±0.00 N/A N/A N/A N/A N/A N/A N/A 71.227±0.00 103.904±62.72 43.545±0.00
ENSMUST00000152028 N/A 22.749±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153664 33.703±5.40 N/A 18.367±0.52 10.030±0.00 N/A 13.540±0.00 11.432±1.47 115.125±11.15 12.793±3.96 25.567±1.26 5.185±0.00 36.347±10.87 78.528±30.87 12.292±0.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001XD CIL_0001XD_0002 CGP 5:35056813-35105766

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005576 IEA extracellular region
GO:0005886 ISO plasma membrane
GO:0008201 IEA heparin binding
GO:0010916 IEA negative regulation of very-low-density lipoprotein particle clearance
GO:0031982 IEA vesicle
GO:0032091 IEA negative regulation of protein binding
GO:0035473 IEA lipase binding
GO:0048019 IEA receptor antagonist activity
GO:0048237 IEA rough endoplasmic reticulum lumen
GO:0050750 IPI low-density lipoprotein particle receptor binding
GO:0070326 IEA very-low-density lipoprotein particle receptor binding
GO:1900116 IEA extracellular negative regulation of signal transduction
GO:1900222 IEA negative regulation of beta-amyloid clearance

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000033604 lrpap1 low density lipoprotein receptor-related protein associated protein 1 protein_coding Danio_rerio
ENSG00000163956 LRPAP1 low density lipoprotein receptor-related protein associated protein 1 protein_coding Homo_sapiens

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