C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: low density lipoprotein receptor-related protein associated protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000500728 LRPAP1-001 ENSG00000163956 9606 - 4:3506376-3532559 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000500728
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000500728 2.387±0.00 3.205±0.00 0.939±0.00 3.705±0.97 2.026±1.09 1.660±0.88 3.577±0.00 2.913±1.52 1.428±0.63 1.839±0.71 1.692±0.80 3.035±1.59 17.160±4.12 7.300±3.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001XD CIL_0001XD_0001 CGP 4:3463311-3532559

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004873 TAS asialoglycoprotein receptor activity
GO:0005515 IPI protein binding
GO:0005576 IDA extracellular region
GO:0005783 IDA:IEA endoplasmic reticulum
GO:0005886 IDA plasma membrane
GO:0006457 TAS protein folding
GO:0006898 TAS receptor-mediated endocytosis
GO:0008201 IEA heparin binding
GO:0010916 IDA negative regulation of very-low-density lipoprotein particle clearance
GO:0016021 TAS integral component of membrane
GO:0016192 TAS vesicle-mediated transport
GO:0031982 IEA vesicle
GO:0032091 IDA negative regulation of protein binding
GO:0035473 IEA lipase binding
GO:0048019 IDA receptor antagonist activity
GO:0048237 IEA rough endoplasmic reticulum lumen
GO:0050750 IDA:IEA low-density lipoprotein particle receptor binding
GO:0051082 TAS unfolded protein binding
GO:0070326 IPI very-low-density lipoprotein particle receptor binding
GO:1900116 IDA extracellular negative regulation of signal transduction
GO:1900222 IGI negative regulation of beta-amyloid clearance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030986 Lrpap1-001 protein_coding Mus_musculus 0 808
ENSMUST00000147028 Lrpap1-005 retained_intron Mus_musculus 0 424
ENSMUST00000135207 Lrpap1-006 retained_intron Mus_musculus 0 399
ENSMUST00000153664 Lrpap1-004 protein_coding Mus_musculus 0 381
ENSMUST00000168162 Pdgfra-202 protein_coding Mus_musculus 0.0001 55
ENSMUST00000000476 Pdgfra-201 protein_coding Mus_musculus 0.0001 55

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