C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein 123
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000164068 RNF123 9606 + 3:49689499-49721529 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000327697 RNF123-001 49689499-49721527 protein_coding
  ENST00000432042 RNF123-002 49689538-49712830 protein_coding
  ENST00000433785 RNF123-007 49712830-49721526 protein_coding
  ENST00000443204 RNF123-009 49689557-49697412 nonsense_mediated_decay
  ENST00000444689 RNF123-012 49713527-49715889 nonsense_mediated_decay
  ENST00000454491 RNF123-008 49689557-49697204 protein_coding
  ENST00000457726 RNF123-003 49689544-49721527 nonsense_mediated_decay
  ENST00000469978 RNF123-011 49712550-49716043 retained_intron
  ENST00000486102 RNF123-005 49689562-49721529 retained_intron
  ENST00000487805 RNF123-006 49689565-49721527 retained_intron
  ENST00000494005 RNF123-010 49700500-49702110 retained_intron
  ENST00000497099 RNF123-013 49718104-49720890 processed_transcript
  ENST00000498376 RNF123-014 49720559-49721529 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000327697ENST00000432042ENST00000487805
Transcript ID Adipose Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000327697 5.610±0.00 3.454±0.00 4.327±1.86 4.851±2.36 2.934±0.45 3.460±1.90 1.155±0.00 4.748±0.00 15.827±3.30 7.976±1.55 11.576±1.39 16.420±4.63
ENST00000432042 N/A N/A N/A N/A N/A N/A 1.843±0.00 N/A N/A N/A N/A N/A
ENST00000487805 N/A N/A N/A N/A N/A N/A 0.846±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005NE CIL_0005NE_0002 CGP 3:49689499-49721529

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000031269 rnf123 ring finger protein 123 protein_coding Danio_rerio
ENSDARG00000091302 CABZ01048349.1 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000041528 Rnf123 ring finger protein 123 protein_coding Mus_musculus

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