C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein 123
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000041528 Rnf123 10090 - 9:108051534-108083346 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000047746 Rnf123-201 108051677-108079301 protein_coding
  ENSMUST00000159136 Rnf123-008 108055899-108079728 retained_intron
  ENSMUST00000159306 Rnf123-002 108052225-108059730 nonsense_mediated_decay
  ENSMUST00000159372 Rnf123-003 108077722-108083344 protein_coding
  ENSMUST00000159523 Rnf123-006 108051693-108052230 retained_intron
  ENSMUST00000159526 Rnf123-010 108052242-108052699 retained_intron
  ENSMUST00000160249 Rnf123-001 108051534-108083346 protein_coding
  ENSMUST00000160649 Rnf123-005 108052234-108079375 protein_coding
  ENSMUST00000160841 Rnf123-009 108058168-108061989 retained_intron
  ENSMUST00000161673 Rnf123-007 108051677-108079740 retained_intron
  ENSMUST00000161828 Rnf123-012 108071160-108078269 protein_coding
  ENSMUST00000162123 Rnf123-014 108056066-108057039 retained_intron
  ENSMUST00000162152 Rnf123-015 108071382-108073121 processed_transcript
  ENSMUST00000162355 Rnf123-004 108051672-108079301 protein_coding
  ENSMUST00000162516 Rnf123-011 108071446-108079266 protein_coding
  ENSMUST00000162753 Rnf123-013 108056560-108059765 nonsense_mediated_decay
  ENSMUST00000174504 Rnf123-016 108071219-108079305 protein_coding
  ENSMUST00000178267 Rnf123-202 108051677-108079375 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000159136ENSMUST00000160249ENSMUST00000160649ENSMUST00000161673ENSMUST00000162355ENSMUST00000178267
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000159136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.381±0.00 N/A N/A
ENSMUST00000160249 6.922±0.51 6.299±2.23 5.032±0.00 3.881±0.48 5.986±0.94 5.955±0.61 6.279±1.27 6.106±0.70 N/A 4.816±0.29 N/A 7.399±0.71 4.360±0.26 5.939±2.00
ENSMUST00000160649 N/A N/A N/A 5.373±0.00 14.438±0.00 N/A N/A N/A N/A N/A 9.711±0.51 12.698±0.00 N/A 2.477±0.00
ENSMUST00000161673 N/A N/A N/A N/A N/A N/A N/A N/A 19.038±1.88 N/A N/A N/A N/A N/A
ENSMUST00000162355 6.512±0.02 6.474±0.98 4.684±0.21 3.644±0.23 5.863±0.96 5.901±0.94 3.378±0.00 4.723±0.59 N/A 7.342±0.43 N/A 9.474±1.16 N/A 1.601±0.00
ENSMUST00000178267 11.735±1.49 7.905±1.91 10.275±0.89 10.526±1.50 13.149±3.13 9.007±0.95 13.225±2.80 11.001±2.51 25.270±10.66 11.451±2.20 27.689±4.49 12.330±1.25 N/A 18.244±8.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007GV CIL_0007GV_0002 CGP 9:108002501-108052801
CIL_0005NE CIL_0005NE_0003 CGP 9:108051534-108083346

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000031269 rnf123 ring finger protein 123 protein_coding Danio_rerio
ENSDARG00000091302 CABZ01048349.1 Uncharacterized protein protein_coding Danio_rerio
ENSG00000164068 RNF123 ring finger protein 123 protein_coding Homo_sapiens

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