C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000164167 LSM6 9606 + 4:146175685-146200000 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000296581 LSM6-001 146175685-146190044 protein_coding
  ENST00000502781 LSM6-002 146175729-146190046 protein_coding
  ENST00000503982 LSM6-003 146175727-146183646 processed_transcript
  ENST00000504181 LSM6-005 146175748-146190187 nonsense_mediated_decay
  ENST00000507449 LSM6-006 146182923-146187551 retained_intron
  ENST00000510331 LSM6-004 146175770-146176686 processed_transcript
  ENST00000515311 LSM6-007 146175703-146200000 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000296581ENST00000502781ENST00000503982ENST00000504181ENST00000507449ENST00000515311
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000296581 7.997±0.00 8.246±0.00 0.974±0.00 3.650±0.70 4.274±3.69 5.375±0.00 1.023±0.61 3.278±0.00 1.595±0.61 4.808±0.00 2.356±0.00 7.683±4.89 6.618±1.55 16.026±0.00
ENST00000502781 N/A N/A N/A 0.830±0.00 N/A 2.832±0.00 0.593±0.00 N/A N/A 1.359±0.00 N/A N/A N/A N/A
ENST00000503982 N/A N/A N/A N/A N/A N/A 0.219±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000504181 5.266±0.00 3.171±0.00 N/A 2.444±0.00 4.347±0.00 3.573±0.00 0.286±0.00 3.740±0.00 0.868±0.00 4.890±0.00 1.878±0.92 10.397±7.12 N/A N/A
ENST00000507449 N/A N/A N/A N/A 1.730±0.00 N/A N/A N/A N/A N/A N/A 28.274±0.00 21.008±0.00 22.412±0.00
ENST00000515311 15.265±0.00 6.596±0.00 N/A 5.046±0.00 9.484±0.00 8.872±0.00 1.851±1.54 6.318±0.00 2.427±2.16 8.456±0.00 3.162±0.00 22.344±7.10 19.318±9.51 23.237±5.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00064E CIL_00064E_0002 CGP 4:145757627-146200000

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0005515 IPI protein binding
GO:0005681 IEA spliceosomal complex
GO:0005829 TAS cytosol
GO:0006364 IEA rRNA processing
GO:0006397 IEA mRNA processing
GO:0008033 IEA tRNA processing
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0030532 TAS small nuclear ribonucleoprotein complex
GO:0043928 TAS exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036995 lsm6 LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000031683 Lsm6 LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein_coding Mus_musculus

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