C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000515311 LSM6-007 ENSG00000164167 9606 + 4:146175703-146200000 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000515311
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000515311 15.265±0.00 6.596±0.00 5.046±0.00 9.484±0.00 8.872±0.00 1.851±1.54 6.318±0.00 2.427±2.16 8.456±0.00 3.162±0.00 22.344±7.10 19.318±9.51 23.237±5.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00064E CIL_00064E_0002 CGP 4:145757627-146200000

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0005515 IPI protein binding
GO:0005681 IEA spliceosomal complex
GO:0005829 TAS cytosol
GO:0006364 IEA rRNA processing
GO:0006397 IEA mRNA processing
GO:0008033 IEA tRNA processing
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0030532 TAS small nuclear ribonucleoprotein complex
GO:0043928 TAS exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000051867 Lsm6-001 protein_coding Mus_musculus 0 394
ENSMUST00000146824 Lsm6-004 retained_intron Mus_musculus 0 383
ENSMUST00000130325 Lsm6-002 protein_coding Mus_musculus 0 381
ENSMUST00000118132 Gm12571-001 processed_pseudogene Mus_musculus 0 322
ENSMUST00000075609 Gm2531-201 pseudogene Mus_musculus 0 320
ENSMUST00000126174 Lsm6-003 retained_intron Mus_musculus 0 239

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