C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031683 Lsm6 10090 - 8:78804865-78821140 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000051867 Lsm6-001 78806451-78821140 protein_coding
  ENSMUST00000126174 Lsm6-003 78808037-78810210 retained_intron
  ENSMUST00000130325 Lsm6-002 78804865-78821140 protein_coding
  ENSMUST00000146824 Lsm6-004 78808058-78813214 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000051867ENSMUST00000130325ENSMUST00000146824
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000051867 2.965±1.12 4.368±0.78 6.837±2.01 5.480±3.23 2.576±0.21 2.098±0.37 1.508±0.15 3.206±0.29 4.964±2.77 3.368±0.44 3.498±0.34 3.374±0.90 2.904±1.01 1.141±0.35
ENSMUST00000130325 1.330±0.45 1.298±0.25 1.846±0.59 2.407±0.83 1.148±0.25 0.851±0.23 0.909±0.14 1.320±0.23 1.729±1.06 1.392±0.15 1.125±0.18 1.412±0.61 2.213±1.00 1.163±0.39
ENSMUST00000146824 2.821±0.03 4.678±0.00 18.326±0.00 28.662±18.11 6.675±3.45 1.928±0.00 5.942±1.45 6.844±1.37 15.798±11.52 4.891±1.14 21.189±3.82 45.902±31.13 57.217±50.79 8.605±10.27

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005681 IEA spliceosomal complex
GO:0005737 IEA cytoplasm
GO:0006364 IEA rRNA processing
GO:0006397 IEA mRNA processing
GO:0008033 IEA tRNA processing
GO:0008380 IEA RNA splicing
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036995 lsm6 LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein_coding Danio_rerio
ENSG00000164167 LSM6 LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein_coding Homo_sapiens

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