C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000504181 LSM6-005 ENSG00000164167 9606 + 4:146175748-146190187 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryENST00000504181
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENST00000504181 5.266±0.00 3.171±0.00 2.444±0.00 4.347±0.00 3.573±0.00 0.286±0.00 3.740±0.00 0.868±0.00 4.890±0.00 1.878±0.92 10.397±7.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00064E CIL_00064E_0002 CGP 4:145757627-146200000

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0005515 IPI protein binding
GO:0005681 IEA spliceosomal complex
GO:0005829 TAS cytosol
GO:0006364 IEA rRNA processing
GO:0006397 IEA mRNA processing
GO:0008033 IEA tRNA processing
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0030532 TAS small nuclear ribonucleoprotein complex
GO:0043928 TAS exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000051867 Lsm6-001 protein_coding Mus_musculus 0 394
ENSMUST00000146824 Lsm6-004 retained_intron Mus_musculus 0 383
ENSMUST00000130325 Lsm6-002 protein_coding Mus_musculus 0 381
ENSMUST00000118132 Gm12571-001 processed_pseudogene Mus_musculus 0 322
ENSMUST00000075609 Gm2531-201 pseudogene Mus_musculus 0 320
ENSMUST00000126174 Lsm6-003 retained_intron Mus_musculus 0 239

Loading